Evidence map›Paper›PMID 37362739›Full record

ArticleMultimedia tools and applications2023

Drug discovery through Covid-19 genome sequencing with siamese graph convolutional neural network.

Soumen Kumar Pati, Manan Kumar Gupta, Ayan Banerjee, Rinita Shai, Palaiahnakote Shivakumara

Abstract read
In one paragraph

Article in Multimedia tools and applications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Soumen Kumar Pati *Department of Bioinformatics, Maulana Abul Kalam Azad University of Technology, Haringhata, West Bengal 741249 India.
Manan Kumar GuptaDepartment of Bioinformatics, Maulana Abul Kalam Azad University of Technology, Haringhata, West Bengal 741249 India.
Ayan Banerjee *Department of Computer Science & Engineering, Jalpaiguri Governmemt Engineering College, Jalpaiguri, West Bengal 735102 India.
Rinita ShaiDepartment of Mathematics, Behala College, Calcutta University, Kolkata, West Bengal 700060 India.
Palaiahnakote ShivakumaraComputer Science and Information Technology, University of Malaya, Kuala Lumpur, Malaysia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

After several waves of COVID-19 led to a massive loss of human life worldwide due to the changes in its variants and the vast explosion. Several researchers proposed neural network-based drug discovery techniques to fight against the pandemic; utilizing neural networks has limitations (Exponential time complexity, Non-Convergence, Mode Collapse, and Diminished Gradient). To overcome those difficulties, this paper proposed a hybrid architecture that will help to repurpose the most appropriate medicines for the treatment of COVID-19. A brief investigation of the sequences has been made to discover the gene density and noncoding proportion through the next gene sequencing. The paper tracks the exceptional locales in the virus DNA sequence as a Drug Target Region (DTR). Then the variable DNA neighborhood search is applied to this DTR to obtain the DNA interaction network to show how the genes are correlated. A drug database has been obtained based on the ontological property of the genomes with advanced D3Similarity so that all the chemical components of the drug database have been identified. Other methods obtained hydroxychloroquine as an effective drug which was rejected by WHO. However, The experimental results show that Remdesivir and Dexamethasone are the most effective drugs, with 97.41 and 97.93%, respectively.

Indexed as

COVID-19D3SimilarityDNA SequencingDrug RepurposingGraph Neural NetworkMulti-view LearningNext Gene SequencingSiamese Network

Identifiers

PMID37362739
PMCPMC10170456

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.