ArticleBMC genomics2023
Complete chloroplast genome structural characterization of two Phalaenopsis (Orchidaceae) species and comparative analysis with their alliance.
Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed.
- Comparative plastid genomics of Gastrochilus (Orchidaceae) with insights into molecular markers and phylogeny.BMC genomics · 2026Article
- Complete Chloroplast Genome of theEcology and evolution · 2026Article
- Comprehensive analysis of the complete chloroplast genome of white pomegranate and phylogenetic relationships within Myrtales.BMC genomics · 2026Article
- Comparative genomics, phylogenomic reconstruction and divergence time analysis of 32Frontiers in plant science · 2026Article
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- Chloroplast genome analysis reveals intraspecific variation and phylogenetic conflicts in Bletilla.Scientific reports · 2025Article
- Hybridization of Lycium qingshuiheense and L. ningxiaense revealed using morphological, SSR markers, and chloroplast genomic data.BMC genomics · 2025Article
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- Complete chloroplast genome of two Brachycorythis (Orchidaceae) species from China: comparative analysis and phylogenetic implications.BMC genomics · 2025Article
- Comparative Analysis of the Chloroplast Genomes of Cypripedium: Assessing the Roles of SSRs and TRs in the Non-Coding Regions of LSC in Shaping Chloroplast Genome Size.International journal of molecular sciences · 2025Article
- Complete chloroplast genome of eight Phaius (Orchidaceae) species from China: comparative analysis and phylogenetic relationship.BMC plant biology · 2025Article
- Complete chloroplast genomes of eight Delphinium taxa (Ranunculaceae) endemic to Xinjiang, China: insights into genome structure, comparative analysis, and phylogenetic relationships.BMC plant biology · 2024Article
- Complete chloroplast genome structural characterization of two Aerides (Orchidaceae) species with a focus on phylogenetic position of Aerides flabellata.BMC genomics · 2024Article
- Mitochondrial genomes of four slug moths (Lepidoptera, Limacodidae): Genome description and phylogenetic implications.Ecology and evolution · 2024Article
- The Complete Chloroplast Genomes ofInternational journal of molecular sciences · 2024Article
- Article
- Complete chloroplast genome data reveal the existence of theFrontiers in plant science · 2024Article
- Complete Chloroplast Genomes and the Phylogenetic Analysis of Three Native Species of Paeoniaceae from the Sino-Himalayan Flora Subkingdom.International journal of molecular sciences · 2023Article
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6 authors.
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Abstract
backgroundThe taxonomy and infrageneric delimitation of Phalaenopsis Blume has been significantly disputed due to some overlapping morphological features between species related, which needed further evidence for clarification. The structural characterization of complete chloroplast genomes of P. storbatiana and P. wilsonii were analyzed and compared with those of related taxa to provide a better understanding of their genomic information on taxonomy and phylogeny.
resultsIt was shown that chloroplast genomes of Phalaenopsis storbatiana and P. wilsonii had a typical quadripartite structure with conserved genome arrangements and moderate divergence. The chloroplast genomes of P. storbatiana and P. wilsonii were 145,885 bp and 145,445 bp in length, respectively, and shared a similar GC content of 36.8%. Gene annotations of two species revealed 109 single-copy genes consistently. In addition, 20 genes duplicated in the inverted regions, 16 genes each possessed one or more introns, and five ndh (NA (D)H dehydrogenase) genes were observed in both. Comparative analysis of the total cp genomes of P. storbatiana and P. wilsonii with those of other six related Phalaenopsis species confirmed the stable sequence identity for coding and non-coding regions and higher sequence variation in SC regions than IR regions. Most of their protein-coding genes had a high degree of codon preference. Moreover, 45 genes were discovered with significantly positive selection. However, different amplifications in IR regions were observed in these eight species. Phylogenetic analysis based on CDS from 60 species representing main clades in Orchidaceae indicated that Phalaenopsis species including P. stobartiana and P. wilsonii formed a monophyletic clade with high bootstrap nested in tribe Vandeae of Epidendroideae, which was consistent with those from previous studies.
conclusionsThe results could provide insight into understanding the plastome evolution and phylogenetic relationships of Phalaenopsis.
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