Evidence map›Paper›PMID 37370232›Full record

ArticleIntegrative and comparative biology2023

Cephalopod-omics: Emerging Fields and Technologies in Cephalopod Biology.

Tom Baden, John Briseño, Gabrielle Coffing, Sophie Cohen-Bodénès, Amy Courtney, Dominick Dickerson, Gül Dölen, Graziano Fiorito, Camino Gestal, Taryn Gustafson and 34 more

Open access · hybridAbstract read
In one paragraph

Article in Integrative and comparative biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
10.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

44 authors at 20 institutions in 14 countries.

Tom BadenSchool of Life Sciences, University of Sussex, Brighton BN1 9QG, UK.ORCID 0000-0003-2808-4210
John BriseñoMolecular and Cell Biology Department, University of Connecticut, Storrs, CT 06269, USA.ORCID 0000-0002-2702-5078
Gabrielle CoffingBiology Department: Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403-5289, USA.ORCID 0000-0001-8546-6595
Sophie Cohen-BodénèsLaboratoire des Systèmes Perceptifs, Département d'Etudes Cognitives, Ecole Normale Supérieure, PSL University, CNRS, 75005 Paris, France.ORCID 0000-0001-7924-3942
Amy CourtneyMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK.ORCID 0000-0003-0495-1711
Dominick DickersonFriday Harbor Laboratory, University of Washington, Seattle, WA 98250, USA.ORCID 0000-0003-3075-9969
Gül DölenDepartment of Neuroscience, Johns Hopkins University, Baltimore, MD 21218, USA.ORCID 0000-0003-1780-995X
Graziano FioritoDepartment of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, 80121 Napoli, Italy.ORCID 0000-0003-2926-9479
Camino GestalLaboratory of Marine Molecular Pathobiology, Institute of Marine Research (IIM), Spanish National Research Council (CSIC), Vigo 36208, Spain.ORCID 0000-0003-1931-9567
Taryn GustafsonUniversity of Central Florida, Orlando, FL 32826, USA.
Elizabeth Heath-HeckmanDepartments of Integrative Biology and Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA.ORCID 0000-0001-5265-9032
Qiaz HuaDepartment of Ecology and Evolution, University of Adelaide, Adelaide, South Australia 5000, Australia.ORCID 0000-0002-3128-7273
Pamela ImperadoreDepartment of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, 80121 Napoli, Italy.ORCID 0000-0002-9947-0971
Ryosuke KimbaraMisaki Marine Biological Station, School of Science, The University of Tokyo, Miura, Kanagawa 238-0225, Japan.ORCID 0000-0003-3328-0638
Mirela KrólAdam Mickiewicz University in Poznań, Poznań 61-712, Poland.
Zdeněk LajbnerPhysics and Biology Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna, Kunigami District, Okinawa 904-0495, Japan.ORCID 0000-0001-7528-5408
Nicolás LichilínDepartment of Neurosciences and Developmental Biology, University of Vienna, Vienna 1010, Austria.ORCID 0000-0002-3674-9561
Filippo MacchiProgram in Biology, New York University Abu Dhabi, P.O. Box 129188 Abu Dhabi, United Arab Emirates.ORCID 0000-0001-8226-4816
Matthew J McCoyDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-8250-0564
Michele K NishiguchiDepartment of Molecular and Cell Biology, School of Natural Sciences, University of California, Merced, 5200 N. Lake Blvd., Merced, CA 95343, USA.ORCID 0000-0002-8950-4621
Spencer V NyholmMolecular and Cell Biology Department, University of Connecticut, Storrs, CT 06269, USA.ORCID 0000-0001-5597-1945
Eve OtjacquesMARE-Marine and Environmental Sciences Centre & ARNET-Aquatic Research Network, Laboratório Marítimo da Guia, Faculdade de Ciências, Universidade de Lisboa, Av. Nossa Senhora do Cabo, 939, 2750-374 Cascais, Portugal.ORCID 0000-0002-0880-9360
Pedro Antonio Pérez-FerrerDepartment of Molecular and Cell Biology, School of Natural Sciences, University of California, Merced, 5200 N. Lake Blvd., Merced, CA 95343, USA.ORCID 0000-0002-5831-5078
Giovanna PonteDepartment of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, 80121 Napoli, Italy.ORCID 0000-0002-1779-958X
Judit R PungorBiology Department: Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403-5289, USA.ORCID 0000-0002-3858-9442
Thea F RogersDepartment of Neurosciences and Developmental Biology, University of Vienna, Vienna 1010, Austria.ORCID 0000-0003-0198-0242
Joshua J C RosenthalMarine Biological Laboratory, The Eugene Bell Center for Regenerative Biology and Tissue Engineering, Woods Hole, MA 02543-1015, USA.ORCID 0000-0001-8139-9364
Lisa RouressolDepartment of Neurosciences and Developmental Biology, University of Vienna, Vienna 1010, Austria.ORCID 0000-0003-4918-0711
Noelle RubasDepartment of Molecular Biosciences and Bioengineering, University of Hawaii Manoa, Honolulu, HI 96822, USA.ORCID 0000-0002-1967-1352
Gustavo SanchezMolecular Genetics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan.ORCID 0000-0002-6490-2842
Catarina Pereira SantosMARE-Marine and Environmental Sciences Centre & ARNET-Aquatic Research Network, Laboratório Marítimo da Guia, Faculdade de Ciências, Universidade de Lisboa, Av. Nossa Senhora do Cabo, 939, 2750-374 Cascais, Portugal.
Darrin T SchultzDepartment of Neurosciences and Developmental Biology, University of Vienna, Vienna 1010, Austria.ORCID 0000-0003-1190-1122
Eve SeuntjensLaboratory of Developmental Neurobiology, Department of Biology, KU Leuven, Leuven 3000, Belgium.ORCID 0000-0002-0126-461X
Jeremea O Songco-CaseyBiology Department: Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403-5289, USA.ORCID 0000-0003-3118-6111
Ian Erik StewartNeural Circuits and Behaviour Lab, Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin 13125, Germany.ORCID 0000-0001-5307-1564
Ruth StyfhalsLaboratory of Developmental Neurobiology, Department of Biology, KU Leuven, Leuven 3000, Belgium.ORCID 0000-0002-5287-8830
Surangkana TuanapayaLaboratory of genetics and applied breeding of molluscs, Fisheries College, Ocean University of China, Qingdao 266100, China.ORCID 0000-0001-5004-5846
Nidhi VijayanMolecular and Cell Biology Department, University of Connecticut, Storrs, CT 06269, USA.ORCID 0000-0002-0615-9587
Anton WeissenbacherVienna Zoo, Maxingstraße 13b, 1130 Vienna, Austria.
Lucia ZifcakovaPhysics and Biology Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna, Kunigami District, Okinawa 904-0495, Japan.ORCID 0000-0002-8037-2116
Grace SchulzUniversity of Chicago, Chicago, IL 60637, USA.
Willem WeertmanFriday Harbor Laboratory, University of Washington, Seattle, WA 98250, USA.
Oleg SimakovDepartment of Neurosciences and Developmental Biology, University of Vienna, Vienna 1010, Austria.ORCID 0000-0002-3585-4511
Caroline B AlbertinMarine Biological Laboratory, The Eugene Bell Center for Regenerative Biology and Tissue Engineering, Woods Hole, MA 02543-1015, USA.ORCID 0000-0003-0933-7665
University of Vienna · ATOkinawa Institute of Science and Technology Graduate University · JPStazione Zoologica Anton Dohrn · ITUniversity of Connecticut · USUniversity of Oregon · USKU Leuven · BEMarine Biological Laboratory · USUniversity of California, Merced · USUniversity of Lisbon · PTUniversity of Washington · USAdam Mickiewicz University in Poznań · PLCentre National de la Recherche Scientifique · FRConsejo Superior de Investigaciones Científicas · ESJohns Hopkins University · USMax Delbrück Center · DEMichigan State University · USMRC Laboratory of Molecular Biology · GBNew York University Abu Dhabi · AEOcean University of China · CNStanford University · US

Funding

Graduate Training in Genetics Administrative Supplement - Career Curriculum DevelopmentT32GM007413 · NIGMS · UNIVERSITY OF OREGON · PI GUILLEMIN, KAREN J · 1985 to 2022
$7.8M
Elucidating Molecular Mechanisms Underlying Cooperation in Animal-Bacterial SymbiosesR35GM150478 · NIGMS · MICHIGAN STATE UNIVERSITY · PI Elizabeth A. Heath-Heckman · 2023 to 2026
$1.5M
Medical Research Council MC_U105185857NIGMS NIH HHS R35 GM150478NIGMS NIH HHS T32 GM007413
6 · The paper itself

Abstract

Few animal groups can claim the level of wonder that cephalopods instill in the minds of researchers and the general public. Much of cephalopod biology, however, remains unexplored: the largest invertebrate brain, difficult husbandry conditions, and complex (meta-)genomes, among many other things, have hindered progress in addressing key questions. However, recent technological advancements in sequencing, imaging, and genetic manipulation have opened new avenues for exploring the biology of these extraordinary animals. The cephalopod molecular biology community is thus experiencing a large influx of researchers, emerging from different fields, accelerating the pace of research in this clade. In the first post-pandemic event at the Cephalopod International Advisory Council (CIAC) conference in April 2022, over 40 participants from all over the world met and discussed key challenges and perspectives for current cephalopod molecular biology and evolution. Our particular focus was on the fields of comparative and regulatory genomics, gene manipulation, single-cell transcriptomics, metagenomics, and microbial interactions. This article is a result of this joint effort, summarizing the latest insights from these emerging fields, their bottlenecks, and potential solutions. The article highlights the interdisciplinary nature of the cephalopod-omics community and provides an emphasis on continuous consolidation of efforts and collaboration in this rapidly evolving field.

Identifiers

PMID37370232
PMCPMC10755191
OpenAlexW4382345312

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.