Evidence map›Paper›PMID 37386436›Full record

ArticleBMC genomics2023

Sequence level genome-wide associations for bull production and fertility traits in tropically adapted bulls.

Wei Liang Andre Tan, Laercio Ribeiro Porto Neto, Antonio Reverter, Michael McGowan, Marina Rufino Salinas Fortes

Abstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Wei Liang Andre TanSchool of Chemistry and Molecular Biosciences, The University of Queensland, Chemistry Bld, 68 Cooper Rd, Brisbane City, QLD, 4072, Australia. weiliangandre.tan@uq.net.au.
Laercio Ribeiro Porto NetoCSIRO Agriculture and Food, 306 Carmody Road, St Lucia, QLD, 4067, Australia.
Antonio ReverterCSIRO Agriculture and Food, 306 Carmody Road, St Lucia, QLD, 4067, Australia.
Michael McGowanSchool of Veterinary Science, The University of Queensland, Gatton, QLD, 4343, Australia.
Marina Rufino Salinas FortesSchool of Chemistry and Molecular Biosciences, The University of Queensland, Chemistry Bld, 68 Cooper Rd, Brisbane City, QLD, 4072, Australia.

Funding

Commonwealth Scientific and Industrial Research Organisation L.GEN.1818Meat and Livestock Australia L.GEN.1818University of Queensland L.GEN.1818
6 · The paper itself

Abstract

backgroundThe genetics of male fertility is complex and not fully understood. Male subfertility can adversely affect the economics of livestock production. For example, inadvertently mating bulls with poor fertility can result in reduced annual liveweight production and suboptimal husbandry management. Fertility traits, such as scrotal circumference and semen quality are commonly used to select bulls before mating and can be targeted in genomic studies. In this study, we conducted genome-wide association analyses using sequence-level data targeting seven bull production and fertility traits measured in a multi-breed population of 6,422 tropically adapted bulls. The beef bull production and fertility traits included body weight (Weight), body condition score (CS), scrotal circumference (SC), sheath score (Sheath), percentage of normal spermatozoa (PNS), percentage of spermatozoa with mid-piece abnormalities (MP) and percentage of spermatozoa with proximal droplets (PD).

resultsAfter quality control, 13,398,171 polymorphisms were tested for their associations with each trait in a mixed-model approach, fitting a multi-breed genomic relationship matrix. A Bonferroni genome-wide significance threshold of 5 × 10

conclusionThe work presented here is a step closer to identifying molecular mechanisms that underpin bull fertility and production. Our work also emphasises the importance of including the X chromosome in genomic analyses. Future research aims to investigate potential causative variants and genes in downstream analyses.

Indexed as

Genome-Wide Association StudySemen AnalysisAnimalsCattleFertilityGenomicsMaleReproductionBull fertilityGenome-wide Association studyQuantitative trait lociSequence-level

Identifiers

PMID37386436
PMCPMC10308662

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.