Evidence map›Paper›PMID 37408143›Full record

ArticleThe plant genome2023

Genetic mapping identified major main-effect and three co-localized quantitative trait loci controlling high iron and zinc content in groundnut.

Sejal Parmar, Pasupuleti Janila, Sunil S Gangurde, Murali T Variath, Vinay Sharma, Deekshitha Bomireddy, Surendra S Manohar, Rajeev K Varshney, Prashant Singam, Manish K Pandey

Open access · goldAbstract read
In one paragraph

Article in The plant genome, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Designing future peanut: the power of genomics-assisted breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Sejal ParmarInternational, Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Pasupuleti JanilaInternational, Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Sunil S GangurdeInternational, Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Murali T VariathInternational, Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Vinay SharmaInternational, Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Deekshitha BomireddyInternational, Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Surendra S ManoharInternational, Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Rajeev K VarshneyInternational, Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.ORCID 0000-0002-4562-9131
Prashant SingamDepartment of Genetics, Osmania University, Hyderabad, India.
Manish K PandeyInternational, Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.ORCID 0000-0002-4101-6530
International Crops Research Institute for the Semi-Arid Tropics · INMurdoch University · AUOsmania University · IN

Funding

Bill and Melinda Gates Foundation OPP1114827Department of Biotechnology (DBT), IndiaICAR-National Agricultural Science Fund, India
6 · The paper itself

Abstract

Malnutrition is a major challenge globally, and groundnut is a highly nutritious self-pollinated legume crop blessed with ample genomic resources, including the routine deployment of genomic-assisted breeding. This study aimed to identify genomic regions and candidate genes for high iron (Fe) and zinc (Zn) content, utilizing a biparental mapping population (ICGV 00440 × ICGV 06040;). Genetic mapping and quantitative trait locus (QTL) analysis (474 mapped single-nucleotide polymorphism loci; 1536.33 cM) using 2 seasons of phenotypic data together with genotypic data identified 5 major main-effect QTLs for Fe content. These QTLs exhibited log-of-odds (LOD) scores ranging from 6.5 to 7.4, explaining phenotypic variation (PVE) ranging from 22% (qFe-Ah01) to 30.0% (qFe-Ah14). Likewise, four major main effect QTLs were identified for Zn content, with LOD score ranging from 4.4 to 6.8 and PVE ranging from 21.8% (qZn-Ah01) to 32.8% (qZn-Ah08). Interestingly, three co-localized major and main effect QTLs (qFe-Ah01, qZn-Ah03, and qFe-Ah11) were identified for both Fe and Zn contents. These genomic regions harbored key candidate genes, including zinc/iron permease transporter, bZIP transcription factor, and vacuolar iron transporter which likely play pivotal roles in the accumulation of Fe and Zn contents in seeds. The findings of this study hold potential for fine mapping and diagnostic marker development for high Fe and Zn contents in groundnut.

Indexed as

FabaceaeQuantitative Trait LociIronPlant BreedingZincIronZinc

Identifiers

PMID37408143
PMCPMC12807354
OpenAlexW4383301871

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.