Evidence map›Paper›PMID 37409528›Full record

ArticleArteriosclerosis, thrombosis, and vascular biology2023

Cross-Tissue Single-Nucleus RNA Sequencing Discovers Tissue-Resident Adipocytes Involved in Propanoate Metabolism in the Human Heart.

Sankha Subhra Das, Asha Kar, Sandhya Rajkumar, Seung Hyuk T Lee, Marcus Alvarez, Kirsi H Pietiläinen, Päivi Pajukanta

Open access · greenAbstract read
In one paragraph

Article in Arteriosclerosis, thrombosis, and vascular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Sankha Subhra DasDepartment of Human Genetics (S.S.D., A.K., S.R., S.H.T.L., M.A., P.P.), David Geffen School of Medicine at UCLA.ORCID 0000-0003-2215-7941
Asha KarDepartment of Human Genetics (S.S.D., A.K., S.R., S.H.T.L., M.A., P.P.), David Geffen School of Medicine at UCLA.
Sandhya RajkumarDepartment of Human Genetics (S.S.D., A.K., S.R., S.H.T.L., M.A., P.P.), David Geffen School of Medicine at UCLA.
Seung Hyuk T LeeDepartment of Human Genetics (S.S.D., A.K., S.R., S.H.T.L., M.A., P.P.), David Geffen School of Medicine at UCLA.ORCID 0000-0002-0943-6076
Marcus AlvarezDepartment of Human Genetics (S.S.D., A.K., S.R., S.H.T.L., M.A., P.P.), David Geffen School of Medicine at UCLA.
Kirsi H PietiläinenObesity Research Unit, Research Program for Clinical and Molecular Metabolism, Faculty of Medicine, University of Helsinki, Finland (K.H.P.).
Päivi PajukantaDepartment of Human Genetics (S.S.D., A.K., S.R., S.H.T.L., M.A., P.P.), David Geffen School of Medicine at UCLA.ORCID 0000-0002-6423-8056
Institute of Human Genetics · PLUniversity of California, Los Angeles · USUniversity of Helsinki · FI

Funding

Methods for Genomic Analysis in Heterogeneous TissuesR01HG010505 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HALPERIN, ERAN · 2019 to 2022
$2.6M
Genetics of adipose cell-type expression and cardiometabolic traitsR01DK132775 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MOHLKE, KAREN L., PAJUKANTA, PAIVI · 2022 to 2025
$2.4M
NHGRI NIH HHS R01 HG010505NIDDK NIH HHS R01 DK132775
6 · The paper itself

Abstract

backgroundAdipocytes are crucial regulators of cardiovascular health. However, not much is known about gene expression profiles of adipocytes residing in nonfat cardiovascular tissues, their genetic regulation, and contribution to coronary artery disease. Here, we investigated whether and how the gene expression profiles of adipocytes in the subcutaneous adipose tissue differ from adipocytes residing in the heart.

methodsWe used single-nucleus RNA-sequencing data sets of subcutaneous adipose tissue and heart and performed in-depth analysis of tissue-resident adipocytes and their cell-cell interactions.

resultsWe first discovered tissue-specific features of tissue-resident adipocytes, identified functional pathways involved in their tissue specificity, and found genes with cell type-specific expression enrichment in tissue-resident adipocytes. By following up these results, we discovered the propanoate metabolism pathway as a novel distinct characteristic of the heart-resident adipocytes and found a significant enrichment of coronary artery disease genome-wide association study risk variants among the right atrium-specific adipocyte marker genes. Our cell-cell communication analysis identified 22 specific heart adipocyte-associated ligand-receptor pairs and signaling pathways, including THBS (thrombospondin) and EPHA (ephrin type-A), further supporting the distinct tissue-resident role of heart adipocytes. Our results also suggest chamber-level coordination of heart adipocyte expression profiles as we observed a consistently larger number of adipocyte-associated ligand-receptor interactions and functional pathways in the atriums than ventricles.

conclusionsOverall, we introduce a new function and genetic link to coronary artery disease for the previously unexplored heart-resident adipocytes.

Indexed as

Coronary Artery DiseasePropionatesAdipocytesGenome-Wide Association StudyHumansLigandsRNASequence Analysis, RNALigandsPropionatesRNAadipocytescell communicationcoronary artery diseaseheartsubcutaneous fat

Identifiers

PMID37409528
PMCPMC10538422
OpenAlexW4383303082

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.