Evidence map›Paper›PMID 37422716›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2023

Defining the clinical validity of genes reported to cause pulmonary arterial hypertension.

Carrie L Welch, Micheala A Aldred, Srimmitha Balachandar, Dennis Dooijes, Christina A Eichstaedt, Stefan Gräf, Arjan C Houweling, Rajiv D Machado, Divya Pandya, Matina Prapa and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 1 pooled it
16.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 9 institutions in 9 countries.

Carrie L WelchDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY.
Micheala A AldredDivision of Pulmonary, Critical Care, Sleep and Occupational Medicine, Indiana University School of Medicine, IN.
Srimmitha BalachandarDivision of Pulmonary, Critical Care, Sleep and Occupational Medicine, Indiana University School of Medicine, IN.
Dennis DooijesDepartment of Genetics, University Medical Centre Utrecht, Utrecht University, Utrecht, the Netherlands.
Christina A EichstaedtCenter for Pulmonary Hypertension, Thoraxklinik-Heidelberg gGmbH, at Heidelberg University Hospital and Translational Lung Research Center, German Center for Lung Research, Heidelberg, Germany; Laboratory for Molecular Genetic Diagnostics, Institute of Human Genetics, Heidelberg University, Heidelberg, Germany.
Stefan GräfNIHR BioResource for Translational Research - Rare Diseases, Department of Haemotology, University of Cambridge, Cambridge Biomedical Campus, Cambridge, United Kingdom; Department of Medicine, School of Clinical Medicine, University of Cambridge, Cambridge Biomedical Campus, Cambridge, United Kingdom.
Arjan C HouwelingDepartment of Human Genetics, Amsterdam UMC, University of Amsterdam, Amsterdam, the Netherlands.
Rajiv D MachadoMolecular and Clinical Sciences Research Institute, St George's University of London, London, United Kingdom.
Divya PandyaDepartment of Medicine, School of Clinical Medicine, University of Cambridge, Cambridge Biomedical Campus, Cambridge, United Kingdom.
Matina PrapaDepartment of Medicine, School of Clinical Medicine, University of Cambridge, Cambridge Biomedical Campus, Cambridge, United Kingdom; St. George's University Hospitals NHS Foundation Trust, London, United Kingdom.
Memoona ShaukatCenter for Pulmonary Hypertension, Thoraxklinik-Heidelberg gGmbH, at Heidelberg University Hospital and Translational Lung Research Center, German Center for Lung Research, Heidelberg, Germany; Laboratory for Molecular Genetic Diagnostics, Institute of Human Genetics, Heidelberg University, Heidelberg, Germany.
Laura SouthgateMolecular and Clinical Sciences Research Institute, St George's University of London, London, United Kingdom.
Jair Tenorio-CastanoInstitute of Medical and Molecular Genetics (INGEMM), Hospital Universitario La Paz, IDiPAZ, Universidad Autonoma de Madrid, Madrid, Spain; Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), Instituto de Salud Carlos III, Madrid, Spain; ITHACA, European Reference Network, Brussels, Belgium.
ClinGen PH VCEP
Wendy K ChungDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY; Department of Medicine, Columbia University Irving Medical Center, New York, NY. Electronic address: Wendy.Chung@childrens.harvard.edu.
International Consortium for Genetic Studies in Pulmonary Arterial Hypertension (PAH-ICON) at the Pulmonary Vascular Research Institute (PVRI)
Johns Hopkins University · USSt George's, University of London · GBUniversity of Cambridge · GBColumbia University Irving Medical Center · USHeidelberg University · DEIndiana University School of MedicineAmsterdam University Medical Centers · NLHospital Universitario La Paz · ESUtrecht University · NL

Funding

The Clinical Genome Resource – Advancing genomic medicine through biocuration and expert assessment of genes and variants at scaleU24HG009650 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JONATHAN S BERG, Jessica Ezzell Hunter · 2021 to 2026
$30.0M
National Biological Sample and Data Repository for PAHR24HL105333 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI NICHOLS, WILLIAM C · 2012 to 2016
$10.1M
Genomics of Pulmonary Vascular DiseaseR35HL140019 · NHLBI · INDIANA UNIVERSITY INDIANAPOLIS · PI ALDRED, MICHEALA A · 2018 to 2024
$5.6M
PVDOMICS Defining the Future Fingerprints of Pulmonary Vascular DiseaseU01HL125218 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BERMAN-ROSENZWEIG, ERIKA S., HORN, EVELYN · 2014 to 2018
$1.6M
Reclassifying Pulmonary Arterial Hypertension Into Immune Phenotypes Using Machine LearningK23HL151892 · NHLBI · STANFORD UNIVERSITY · PI SWEATT, ANDREW JOHN · 2020 to 2024
$942k
British Heart Foundation FS/SBSRF/22/31025NHGRI NIH HHS U24 HG009650NHLBI NIH HHS K23 HL151892NHLBI NIH HHS R24 HL105333NHLBI NIH HHS R35 HL140019NHLBI NIH HHS U01 HL125218Wellcome Trust
6 · The paper itself

Abstract

purposePulmonary arterial hypertension (PAH) is a rare, progressive vasculopathy with significant cardiopulmonary morbidity and mortality. Genetic testing is currently recommended for adults diagnosed with heritable, idiopathic, anorexigen-, hereditary hemorrhagic telangiectasia-, and congenital heart disease-associated PAH, PAH with overt features of venous/capillary involvement, and all children diagnosed with PAH. Variants in at least 27 genes have putative evidence for PAH causality. Rigorous assessment of the evidence is needed to inform genetic testing.

methodsAn international panel of experts in PAH applied a semi-quantitative scoring system developed by the NIH Clinical Genome Resource to classify the relative strength of evidence supporting PAH gene-disease relationships based on genetic and experimental evidence.

resultsTwelve genes (BMPR2, ACVRL1, ATP13A3, CAV1, EIF2AK4, ENG, GDF2, KCNK3, KDR, SMAD9, SOX17, and TBX4) were classified as having definitive evidence and 3 genes (ABCC8, GGCX, and TET2) with moderate evidence. Six genes (AQP1, BMP10, FBLN2, KLF2, KLK1, and PDGFD) were classified as having limited evidence for causal effects of variants. TOPBP1 was classified as having no known PAH relationship. Five genes (BMPR1A, BMPR1B, NOTCH3, SMAD1, and SMAD4) were disputed because of a paucity of genetic evidence over time.

conclusionWe recommend that genetic testing includes all genes with definitive evidence and that caution be taken in the interpretation of variants identified in genes with moderate or limited evidence. Genes with no known evidence for PAH or disputed genes should not be included in genetic testing.

Indexed as

Hypertension, PulmonaryPulmonary Arterial HypertensionActivin Receptors, Type IIAdenosine TriphosphatasesAdultBone Morphogenetic Protein Receptors, Type IIBone Morphogenetic ProteinsChildGenetic Predisposition to DiseaseGenetic TestingHumansMembrane Transport ProteinsMutationProtein Serine-Threonine KinasesActivin Receptors, Type IIACVRL1 protein, humanAdenosine TriphosphatasesATP13A3 protein, humanBMP10 protein, humanBone Morphogenetic Protein Receptors, Type IIBone Morphogenetic ProteinsEIF2AK4 protein, humanMembrane Transport ProteinsProtein Serine-Threonine KinasesGeneticsGenomic medicineMolecular diagnosisPulmonary arterial hypertension

Identifiers

PMID37422716
PMCPMC10766870
OpenAlexW4383215735

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.