Evidence mapPaperPMID 37425811Full record

ArticlebioRxiv : the preprint server for biology2023

Omicron Spike confers enhanced infectivity and interferon resistance to SARS-CoV-2 in human nasal tissue.

Guoli Shi, Tiansheng Li, Kin Kui Lai, Reed F Johnson, Jonathan W Yewdell, Alex A Compton

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 6 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Guoli ShiHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, MD.
Tiansheng LiLaboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, Bethesda, MD.
Kin Kui LaiHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, MD.
Reed F JohnsonLaboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, Bethesda, MD.
Jonathan W YewdellLaboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, Bethesda, MD.
Alex A ComptonHIV Dynamics and Replication Program, Center for Cancer Research, National Cancer Institute, Frederick, MD.
National Cancer Institute · USNational Institute of Allergy and Infectious Diseases · US

Funding

Mechanisms of Virus Entry into Cells and Antiviral Barriers Limiting EntryZIABC011779 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI COMPTON, ALEX · 2017 to 2025
$5.8M
6 · The paper itself

Abstract

Omicron emerged following COVID-19 vaccination campaigns, displaced previous SARS-CoV-2 variants of concern worldwide, and gave rise to lineages that continue to spread. Here, we show that Omicron exhibits increased infectivity in primary adult upper airway tissue relative to Delta. Using recombinant forms of SARS-CoV-2 and nasal epithelial cells cultured at the liquid-air interface, enhanced infectivity maps to the step of cellular entry and evolved recently through mutations unique to Omicron Spike. Unlike earlier variants of SARS-CoV-2, Omicron enters nasal cells independently of serine transmembrane proteases and instead relies upon metalloproteinases to catalyze membrane fusion. This entry pathway unlocked by Omicron Spike enables evasion of constitutive and interferon-induced antiviral factors that restrict SARS-CoV-2 entry following attachment. Therefore, the increased transmissibility exhibited by Omicron in humans may be attributed not only to its evasion of vaccine-elicited adaptive immunity, but also to its superior invasion of nasal epithelia and resistance to the cell-intrinsic barriers present therein.

Identifiers

PMID37425811
PMCPMC10327209
OpenAlexW4375950901

What Socratic holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.