Evidence map›Paper›PMID 37463577›Full record

ArticleDevelopmental cell2023

Spatial organization and function of RNA molecules within phase-separated condensates in zebrafish are controlled by Dnd1.

Kim Joana Westerich, Katsiaryna Tarbashevich, Jan Schick, Antra Gupta, Mingzhao Zhu, Kenneth Hull, Daniel Romo, Dagmar Zeuschner, Mohammad Goudarzi, Theresa Gross-Thebing and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 28 citations in OpenAlex.

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  6. How do RNA molecules distinguish self from non-self?Proceedings of the National Academy of Sciences of the United States of America · 2026
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  19. How germ granules promote germ cell fate.Nature reviews. Genetics · 2024
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Kim Joana WesterichInstitute of Cell Biology, Center for Molecular Biology of Inflammation, University of Münster, 48149 Münster, Germany.
Katsiaryna TarbashevichInstitute of Cell Biology, Center for Molecular Biology of Inflammation, University of Münster, 48149 Münster, Germany.
Jan SchickInstitute of Cell Biology, Center for Molecular Biology of Inflammation, University of Münster, 48149 Münster, Germany.
Antra GuptaInstitute of Cell Biology, Center for Molecular Biology of Inflammation, University of Münster, 48149 Münster, Germany.
Mingzhao ZhuDepartment of Chemistry & Biochemistry and The Baylor Synthesis and Drug-Lead Discovery Laboratory, Baylor University, Waco, TX 76706, USA.
Kenneth HullDepartment of Chemistry & Biochemistry and The Baylor Synthesis and Drug-Lead Discovery Laboratory, Baylor University, Waco, TX 76706, USA.
Daniel RomoDepartment of Chemistry & Biochemistry and The Baylor Synthesis and Drug-Lead Discovery Laboratory, Baylor University, Waco, TX 76706, USA.
Dagmar ZeuschnerElectron Microscopy Facility, Max Planck Institute for Molecular Biomedicine, 48149 Münster, Germany.
Mohammad GoudarziInstitute of Cell Biology, Center for Molecular Biology of Inflammation, University of Münster, 48149 Münster, Germany.
Theresa Gross-ThebingInstitute of Cell Biology, Center for Molecular Biology of Inflammation, University of Münster, 48149 Münster, Germany.
Erez RazInstitute of Cell Biology, Center for Molecular Biology of Inflammation, University of Münster, 48149 Münster, Germany; Max Planck Institute for Molecular Biomedicine, 48149 Münster, Germany. Electronic address: erez.raz@uni-muenster.de.
University of Münster · DEBaylor University · USMax Planck Institute for Molecular Biomedicine · DE

Funding

Pharmacophore-Directed  Retrosynthesis Applied to Bioactive Natural Products Informing Mechanism of Action StudiesR35GM134910 · NIGMS · BAYLOR UNIVERSITY · PI DANIEL ROMO · 2020 to 2026
$2.7M
Development of the waixenicin A pharmacophore as a therapeutic intervention for neonatal hypoxic brain injuryR61NS124922 · NINDS · BAYLOR UNIVERSITY · PI FENG, ZHONG-PING, FLEIG, ANDREA · 2023 to 2024
$692k
NIGMS NIH HHS R35 GM134910NINDS NIH HHS R61 NS124922
6 · The paper itself

Abstract

Germ granules, condensates of phase-separated RNA and protein, are organelles that are essential for germline development in different organisms. The patterning of the granules and their relevance for germ cell fate are not fully understood. Combining three-dimensional in vivo structural and functional analyses, we study the dynamic spatial organization of molecules within zebrafish germ granules. We find that the localization of RNA molecules to the periphery of the granules, where ribosomes are localized, depends on translational activity at this location. In addition, we find that the vertebrate-specific Dead end (Dnd1) protein is essential for nanos3 RNA localization at the condensates' periphery. Accordingly, in the absence of Dnd1, or when translation is inhibited, nanos3 RNA translocates into the granule interior, away from the ribosomes, a process that is correlated with the loss of germ cell fate. These findings highlight the relevance of sub-granule compartmentalization for post-transcriptional control and its importance for preserving germ cell totipotency.

Indexed as

RNAZebrafishAnimalsGene Expression RegulationGerm CellsProteinsRNA-Binding ProteinsZebrafish Proteinsdnd1 protein, zebrafishProteinsRNARNA-Binding ProteinsZebrafish ProteinscondensateDead endgerm cellsgerm granulesnanosphase separationRNA translationzebrafish

Identifiers

PMID37463577
PMCPMC10528888
OpenAlexW4384564240

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.