Evidence map›Paper›PMID 37467631›Full record

ArticleDNA repair2023

Synergistic effects on mutagenicity of tandem lesions containing 8-oxo-7,8-dihydro-2'-deoxyguanosine or Fapy•dG flanked by a 3' 5-formyl-2'-deoxyuridine in human cells.

Jan Henric T Bacurio, Shijun Gao, Haozhe Yang, Ashis K Basu, Marc M Greenberg

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. 8-OxodGuo and Fapy•dG Mutagenicity inChemical research in toxicology · 2024
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jan Henric T BacurioDepartment of Chemistry, University of Connecticut, Storrs, CT 06269, USA.
Shijun GaoDepartment of Chemistry, Johns Hopkins University, Baltimore, MD 21218, USA.
Haozhe YangDepartment of Chemistry, Johns Hopkins University, Baltimore, MD 21218, USA; Department of Respiratory and Critical Care Medicine Targeted Tracer Research and Development Laboratory West China Hospital, Sichuan University, Chengdu, Sichuan 610041, PR China.
Ashis K BasuDepartment of Chemistry, University of Connecticut, Storrs, CT 06269, USA. Electronic address: ashis.basu@uconn.edu.
Marc M GreenbergDepartment of Chemistry, Johns Hopkins University, Baltimore, MD 21218, USA. Electronic address: mgreenberg@jhu.edu.
Johns Hopkins University · USUniversity of Connecticut · US

Funding

How Damaged DNA Forms, and its Subsequent Chemistry: Fundamental Studies and ApplicationsR35GM131736 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI MARC M GREENBERG · 2019 to 2026
$4.3M
Biochemical studies on Fapy-dG with eukaryotic enzymes and in mammalian cellsR01ES027558 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI GREENBERG, MARC M · 2017 to 2021
$1.7M
NIEHS NIH HHS R01 ES027558NIGMS NIH HHS R35 GM131736
6 · The paper itself

Abstract

Modified nucleotides often hinder and/or decrease the fidelity of DNA polymerases. Tandem lesions, which are comprised of DNA modifications at two contiguous nucleotide positions, can be even more detrimental to genome stability. Recently, tandem lesions containing 5-formyl-2'-deoxyuridine (5fdU) flanked at the 5'-position by 8-oxo-7,8-dihydro-2'-deoxyguanosine (8-OxodGuo) or N-(2-deoxy-α,β-D-erythropentofuranosyl)-N-(2,6-diamino-4-hydroxy-5-formamidopyrimidine (Fapy•dG) were discovered. We examined the replication of 5'- 8-OxodGuo-5fdU and 5'-Fapy•dG-5fdU tandem lesions in HEK 293T cells and several polymerase deficient variants by transfecting single-stranded vectors containing them. The local sequence of the tandem lesions encompasses the 273 codon of the p53 gene, a mutational hot-spot. The bypass efficiency and mutation spectra of the tandem lesions were compared to those of the isolated lesions. Replication of weakly mutagenic 5-fdU is little changed when part of the 5'- 8-OxodGuo-5fdU tandem lesion. G → T transversions attributable to 8-OxodGuo increase > 10-fold when the tandem lesion is bypassed. 5'-Fapy•dG-5fdU has a synergistic effect on the error-prone bypass of both lesions. The mutation frequency (MF) of 5'-Fapy•dG-5fdU increases 3-fold compared to isolated Fapy•dG. In addition, a 5'-adjacent Fapy•dG significantly increases the MF of 5fdU. The major mutation, G → T transversions, decrease by almost a third in hPol κ

Indexed as

DNA-Directed DNA PolymeraseMutagens8-Hydroxy-2'-DeoxyguanosineDeoxyguanosineDeoxyuridineDNA DamageHumansMutagenesisNucleotides5-formyl-2'-deoxyuridine8-Hydroxy-2'-DeoxyguanosineDeoxyguanosineDeoxyuridineDNA-Directed DNA PolymeraseMutagensNucleotides8-Oxo-7,8-dihydro-2’-deoxyguanosineError-prone bypassFapy•dGMutagenicityTandem DNA lesionsTranslesion synthesis

Identifiers

PMID37467631
PMCPMC10528826
OpenAlexW4381850252

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.