Evidence map›Paper›PMID 37485372›Full record

ArticleiScience2023

DNA facilitates heterodimerization between human transcription factors FoxP1 and FoxP2 by increasing their conformational flexibility.

Ricardo Coñuecar, Isabel Asela, Maira Rivera, Pablo Galaz-Davison, Jorge González-Higueras, George L Hamilton, Felipe Engelberger, César A Ramírez-Sarmiento, Jorge Babul, Hugo Sanabria and 1 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Ricardo CoñuecarDepartamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago 7800003, Chile.
Isabel AselaDepartamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago 7800003, Chile.
Maira RiveraInstitute for Biological and Medical Engineering, Schools of Engineering, Medicine and Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 7820436, Chile.
Pablo Galaz-DavisonInstitute for Biological and Medical Engineering, Schools of Engineering, Medicine and Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 7820436, Chile.
Jorge González-HiguerasInstitute for Biological and Medical Engineering, Schools of Engineering, Medicine and Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 7820436, Chile.
George L HamiltonDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.
Felipe EngelbergerInstitute for Drug Discovery, Leipzig University Medical School, 04107 Leipzig, Germany.
César A Ramírez-SarmientoInstitute for Biological and Medical Engineering, Schools of Engineering, Medicine and Biological Sciences, Pontificia Universidad Católica de Chile, Santiago 7820436, Chile.
Jorge BabulDepartamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago 7800003, Chile.
Hugo SanabriaDepartment of Physics & Astronomy, Clemson University, Clemson, SC 29634, USA.
Exequiel MedinaDepartamento de Biología, Facultad de Ciencias, Universidad de Chile, Santiago 7800003, Chile.
Pontificia Universidad Católica de Chile · CLUniversity of Chile · CLClemson University · USLeipzig University · DENew York University · US

Funding

SINGLE MOLECULE ANALYSIS OF PSD-95 STRUCTURE AND LIGAND BINDINGR01MH081923 · NIMH · STATE UNIVERSITY NEW YORK STONY BROOK · PI BOWEN, MARK E · 2008 to 2022
$5.6M
NIMH NIH HHS R01 MH081923
6 · The paper itself

Abstract

Transcription factors regulate gene expression by binding to DNA. They have disordered regions and specific DNA-binding domains. Binding to DNA causes structural changes, including folding and interactions with other molecules. The FoxP subfamily of transcription factors in humans is unique because they can form heterotypic interactions without DNA. However, it is unclear how they form heterodimers and how DNA binding affects their function. We used computational and experimental methods to study the structural changes in FoxP1's DNA-binding domain when it forms a heterodimer with FoxP2. We found that FoxP1 has complex and diverse conformational dynamics, transitioning between compact and extended states. Surprisingly, DNA binding increases the flexibility of FoxP1, contrary to the typical folding-upon-binding mechanism. In addition, we observed a 3-fold increase in the rate of heterodimerization after FoxP1 binds to DNA. These findings emphasize the importance of structural flexibility in promoting heterodimerization to form transcriptional complexes.

Indexed as

BiochemistryMolecular biologyStructural biology

Identifiers

PMID37485372
PMCPMC10362293
OpenAlexW4382582758

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.