Evidence map›Paper›PMID 37497616›Full record

ArticleG3 (Bethesda, Md.)2023

RNA viruses, M satellites, chromosomal killer genes, and killer/nonkiller phenotypes in the 100-genomes S. cerevisiae strains.

Sriram Vijayraghavan, Stanislav G Kozmin, Pooja K Strope, Daniel A Skelly, Paul M Magwene, Fred S Dietrich, John H McCusker

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 10 citations in OpenAlex.

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  9. Review
  10. Inhibition of diastatic yeasts byApplied and environmental microbiology · 2024
    Article
  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Sriram VijayraghavanDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA.
Stanislav G KozminDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA.
Pooja K StropeDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA.
Daniel A SkellyDepartment of Biology, Duke University, Durham, NC 27708, USA.
Paul M MagweneDepartment of Biology, Duke University, Durham, NC 27708, USA.
Fred S DietrichDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA.
John H McCuskerDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA.ORCID 0000-0002-8803-9131
Duke University · US

Funding

High throughput S. cerevisiae HAM, GWA & QT/QTL architectureR01GM098287 · NIGMS · DUKE UNIVERSITY · PI DIETRICH, FRED S, MAGWENE, PAUL MITAARI · 2011 to 2014
$2.1M
Functional Variation in a Conserved Pathway Influencing Cellular DifferentiationF32GM110997 · NIGMS · DUKE UNIVERSITY · PI SKELLY, DANIEL A · 2014 to 2016
$135k
NIGMS NIH HHS F32 GM110997NIH HHS R01 GM098287
6 · The paper itself

Abstract

We characterized previously identified RNA viruses (L-A, L-BC, 20S, and 23S), L-A-dependent M satellites (M1, M2, M28, and Mlus), and M satellite-dependent killer phenotypes in the Saccharomyces cerevisiae 100-genomes genetic resource population. L-BC was present in all strains, albeit in 2 distinct levels, L-BChi and L-BClo; the L-BC level is associated with the L-BC genotype. L-BChi, L-A, 20S, 23S, M1, M2, and Mlus (M28 was absent) were in fewer strains than the similarly inherited 2µ plasmid. Novel L-A-dependent phenotypes were identified. Ten M+ strains exhibited M satellite-dependent killing (K+) of at least 1 of the naturally M0 and cured M0 derivatives of the 100-genomes strains; in these M0 strains, sensitivities to K1+, K2+, and K28+ strains varied. Finally, to complement our M satellite-encoded killer toxin analysis, we assembled the chromosomal KHS1 and KHR1 killer genes and used naturally M0 and cured M0 derivatives of the 100-genomes strains to assess and characterize the chromosomal killer phenotypes.

Indexed as

RNA VirusesSaccharomyces cerevisiaePhenotypeRNA, Double-StrandedRNA, ViralRNA, Double-StrandedRNA, Viral100-genomes strainsassociationskillerphenotypesRNA virusSaccharomyces cerevisiae

Identifiers

PMID37497616
PMCPMC10542562
OpenAlexW4385295159

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.