Evidence map›Paper›PMID 37500730›Full record

ArticleNature genetics2023

Landscape of mSWI/SNF chromatin remodeling complex perturbations in neurodevelopmental disorders.

Alfredo M Valencia, Akshay Sankar, Pleuntje J van der Sluijs, F Kyle Satterstrom, Jack Fu, Michael E Talkowski, Samantha A Schrier Vergano, Gijs W E Santen, Cigall Kadoch

Open access · hybridAbstract read
In one paragraph

Article in Nature genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 73 citations in OpenAlex.

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  17. CRISPR-engineered deletion ofbioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Alfredo M Valencia *Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA.
Akshay Sankar *Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA.
Pleuntje J van der SluijsDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, the Netherlands.ORCID http://orcid.org/0000-0002-1174-2806
F Kyle SatterstromStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-6187-7680
Jack FuMassachusetts General Hospital, Boston, MA, USA.
Michael E TalkowskiStanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0003-2889-0992
Samantha A Schrier VerganoChildren's Hospital of the King's Daughters, Norfolk, Virginia, USA.ORCID http://orcid.org/0000-0001-9194-0644
Gijs W E SantenDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, the Netherlands.ORCID http://orcid.org/0000-0003-1959-3267
Cigall KadochDana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA. Cigall_kadoch@dfci.harvard.edu.ORCID http://orcid.org/0000-0002-4058-5985
Broad Institute · USLeiden University Medical Center · NLEastern Virginia Medical School · USMassachusetts General Hospital · US

Funding

Department of HealthHoward Hughes Medical InstituteWellcome TrustWellcome Trust WT098051
6 · The paper itself

Abstract

DNA sequencing-based studies of neurodevelopmental disorders (NDDs) have identified a wide range of genetic determinants. However, a comprehensive analysis of these data, in aggregate, has not to date been performed. Here, we find that genes encoding the mammalian SWI/SNF (mSWI/SNF or BAF) family of ATP-dependent chromatin remodeling protein complexes harbor the greatest number of de novo missense and protein-truncating variants among nuclear protein complexes. Non-truncating NDD-associated protein variants predominantly disrupt the cBAF subcomplex and cluster in four key structural regions associated with high disease severity, including mSWI/SNF-nucleosome interfaces, the ATPase-core ARID-armadillo repeat (ARM) module insertion site, the Arp module and DNA-binding domains. Although over 70% of the residues perturbed in NDDs overlap with those mutated in cancer, ~60% of amino acid changes are NDD-specific. These findings provide a foundation to functionally group variants and link complex aberrancies to phenotypic severity, serving as a resource for the chromatin, clinical genetics and neurodevelopment communities.

Indexed as

Chromatin Assembly and DisassemblyNeurodevelopmental DisordersAnimalsChromatinHumansMammalsNucleosomesTranscription FactorsChromatinNucleosomesTranscription Factors

Identifiers

PMID37500730
PMCPMC10412456
OpenAlexW4385330315

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.