Evidence map›Paper›PMID 37501563›Full record

ArticleEMBO reports2023

Droplet Tn-Seq identifies the primary secretion mechanism for yersiniabactin in Yersinia pestis.

Sarah L Price, Derek Thibault, Taylor M Garrison, Amanda Brady, Haixun Guo, Thomas E Kehl-Fie, Sylvie Garneau-Tsodikova, Robert D Perry, Tim van Opijnen, Matthew B Lawrenz

Open access · greenAbstract read
In one paragraph

Article in EMBO reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Sarah L PriceDepartment of Microbiology and Immunology, University of Louisville, Louisville, KY, USA.ORCID 0000-0002-4392-7506
Derek ThibaultBiology Department, Boston College, Chestnut Hill, MA, USA.
Taylor M GarrisonDepartment of Microbiology and Immunology, University of Louisville, Louisville, KY, USA.ORCID 0000-0002-2407-1466
Amanda BradyDepartment of Microbiology and Immunology, University of Louisville, Louisville, KY, USA.ORCID 0000-0002-4869-6209
Haixun GuoCenter for Predictive Medicine for Biodefense and Emerging Infectious Diseases, University of Louisville, Louisville, KY, USA.
Thomas E Kehl-FieDepartment of Microbiology, University of Illinois Urbana-Champaign, Champaign, IL, USA.ORCID 0000-0001-8234-1113
Sylvie Garneau-TsodikovaDepartment of Pharmaceutical Sciences, University of Kentucky, Lexington, KY, USA.ORCID 0000-0002-7961-5555
Robert D PerryDepartment of Microbiology, Immunology and Molecular Genetics, University of Kentucky, Lexington, KY, USA.
Tim van OpijnenBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0001-6895-6795
Matthew B LawrenzDepartment of Microbiology and Immunology, University of Louisville, Louisville, KY, USA.ORCID 0000-0003-1505-5429
University of Louisville · USUniversity of Kentucky · USBoston College · USBroad Institute · USUniversity of Illinois Urbana-Champaign · US

Funding

Understanding the Host-Microbiome-Therapeutic Triad: Implications for Designing Alternative IntravaginalP20GM125504 · NIGMS · UNIVERSITY OF LOUISVILLE · PI HARIBABU BODDULURI · 2018 to 2026
$24.4M
Predicting the emergence of antibiotic resistance through multi-omics approaches and Immune System-surveillanU01AI124302 · NIAID · BOSTON COLLEGE · PI BENTO, JOSE, COOPER, VAUGHN · 2016 to 2020
$10.2M
Iron independent role for yersiniabactin in Yersinia pestisR01AI148241 · NIAID · UNIVERSITY OF LOUISVILLE · PI LAWRENZ, MATTHEW B · 2021 to 2025
$3.1M
Leveraging host-imposed metal starvation to elucidate the molecular and environmental factors that dictate metal utilization by the iron/manganese superoxide dismutase superfamilyR01AI155611 · NIAID · UNIVERSITY OF IOWA · PI KEHL-FIE, THOMAS EVERETT · 2021 to 2025
$2.8M
A priori adaptive evolution predictions for antibiotic resistance through genome-wide network analyses and machine learningR01AI148470 · NIAID · BOSTON COLLEGE · PI ORTIZ-MARQUEZ, JUAN CESAR FEDERICO, VAN OPIJNEN, TIM · 2020 to 2024
$2.0M
The bacterial response to antibiotics and the evolution of antibiotic resistanceR01AI110724 · NIAID · BOSTON COLLEGE · PI VAN OPIJNEN, TIM · 2015 to 2019
$2.0M
Inflammation and Pathogenesis Training ProgramT32AI132146 · NIAID · UNIVERSITY OF LOUISVILLE · PI LAMONT, RICHARD J, MITCHELL, THOMAS C. · 2018 to 2022
$640k
Zinc acquistion in Yersinia pestisR21AI135225 · NIAID · UNIVERSITY OF LOUISVILLE · PI LAWRENZ, MATTHEW B · 2018 to 2019
$437k
Identification of a novel zinc acquisition system in Yersinia pestisF31AI147404 · NIAID · UNIVERSITY OF LOUISVILLE · PI PRICE, SARAH LEANN · 2019 to 2022
$97k
NIAID NIH HHS F31 AI147404NIAID NIH HHS R01 AI110724NIAID NIH HHS R01 AI148241NIAID NIH HHS R01 AI148470NIAID NIH HHS R01 AI155611NIAID NIH HHS R21 AI135225NIAID NIH HHS T32 AI132146NIAID NIH HHS U01 AI124302NIGMS NIH HHS P20 GM125504
6 · The paper itself

Abstract

Nutritional immunity includes sequestration of transition metals from invading pathogens. Yersinia pestis overcomes nutritional immunity by secreting yersiniabactin to acquire iron and zinc during infection. While the mechanisms for yersiniabactin synthesis and import are well-defined, those responsible for yersiniabactin secretion are unknown. Identification of this mechanism has been difficult because conventional mutagenesis approaches are unable to inhibit trans-complementation by secreted factors between mutants. To overcome this obstacle, we utilized a technique called droplet Tn-seq (dTn-seq), which uses microfluidics to isolate individual transposon mutants in oil droplets, eliminating trans-complementation between bacteria. Using this approach, we first demonstrated the applicability of dTn-seq to identify genes with secreted functions. We then applied dTn-seq to identify an AcrAB efflux system as required for growth in metal-limited conditions. Finally, we showed this efflux system is the primary yersiniabactin secretion mechanism and required for virulence during bubonic and pneumonic plague. Together, these studies have revealed the yersiniabactin secretion mechanism that has eluded researchers for over 30 years and identified a potential therapeutic target for bacteria that use yersiniabactin for metal acquisition.

Indexed as

PlagueYersinia pestisBacterial ProteinsHumansMetalsPhenolsThiazolesBacterial ProteinsMetalsPhenolsThiazolesyersiniabactindrug efflux systemsplaguesiderophorestransposon mutagenesisYersinia pestis

Identifiers

PMID37501563
PMCPMC10561177
OpenAlexW4385330003

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.