Evidence map›Paper›PMID 37505680›Full record

ArticleToxins2023

Histidine Protonation and Conformational Switching in Diphtheria Toxin Translocation Domain.

Mykola V Rodnin, Victor Vasques-Montes, Alexander Kyrychenko, Nuno F B Oliveira, Maithri M Kashipathy, Kevin P Battaile, Justin Douglas, Scott Lovell, Miguel Machuqueiro, Alexey S Ladokhin

Open access · goldAbstract read
In one paragraph

Article in Toxins, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Mykola V RodninDepartment of Biochemistry and Molecular Biology, University of Kansas School of Medicine, Kansas City, KS 66160, USA.
Victor Vasques-MontesDepartment of Biochemistry and Molecular Biology, University of Kansas School of Medicine, Kansas City, KS 66160, USA.
Alexander KyrychenkoDepartment of Biochemistry and Molecular Biology, University of Kansas School of Medicine, Kansas City, KS 66160, USA.ORCID 0000-0002-6223-0990
Nuno F B OliveiraInstitute of Biosystems and Integrative Sciences, University of Lisbon, 1749-016 Lisbon, Portugal.
Maithri M KashipathyProtein Structure and X-ray Crystallography Laboratory, University of Kansas, Lawrence, KS 66047, USA.
Kevin P BattaileNYX, New York Structural Biology Center, Upton, NY 10027, USA.
Justin DouglasCOBRE Bio-NMR Laboratory, University of Kansas, Lawrence, KS 66045, USA.
Scott LovellProtein Structure and X-ray Crystallography Laboratory, University of Kansas, Lawrence, KS 66047, USA.ORCID 0000-0002-3215-4472
Miguel MachuqueiroInstitute of Biosystems and Integrative Sciences, University of Lisbon, 1749-016 Lisbon, Portugal.ORCID 0000-0001-6923-8744
Alexey S LadokhinDepartment of Biochemistry and Molecular Biology, University of Kansas School of Medicine, Kansas City, KS 66160, USA.
University of Kansas · USUniversity of Lisbon · PTNew York Structural Biology Center · US

Funding

Protein Structure Laboratory P30GM110761 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2014 to 2018
$5.6M
Membrane-Mediated Interactions of the Bcl-xL/Bid/Bax Triad of Apoptotic RegulatorsR01GM126778 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI LADOKHIN, ALEXEY, LANGEN, RALF · 2019 to 2022
$1.7M
NIGMS NIH HHS P30 GM110761NIGMS NIH HHS R01 GM126778
6 · The paper itself

Abstract

Protonation of key histidine residues has been long implicated in the acid-mediated cellular action of the diphtheria toxin translocation (T-) domain, responsible for the delivery of the catalytic domain into the cell. Here, we use a combination of computational (constant-pH Molecular Dynamics simulations) and experimental (NMR, circular dichroism, and fluorescence spectroscopy along with the X-ray crystallography) approaches to characterize the initial stages of conformational change happening in solution in the wild-type T-domain and in the H223Q/H257Q double mutant. This replacement suppresses the acid-induced transition, resulting in the retention of a more stable protein structure in solutions at pH 5.5 and, consequently, in reduced membrane-disrupting activity. Here, for the first time, we report the pK

Indexed as

Diphtheria ToxinHistidineCatalytic DomainHydrogen-Ion ConcentrationMolecular Dynamics SimulationProtein ConformationProtein TransportDiphtheria ToxinHistidineacidificationconformational switchingconstant-pH simulationsdiphtheria toxin structuremutations of histidinesNMR spectroscopyX-ray crystallography

Identifiers

PMID37505680
PMCPMC10467104
OpenAlexW4382063295

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.