Evidence map›Paper›PMID 37547970›Full record

ArticleMolecular genetics & genomic medicine2023

In silico validation revealed the role of SCN5A mutations and their genotype-phenotype correlations in Brugada syndrome.

Hung Manh Pham, Duy Phuong Dang, Thanh Dat Ta, Thi Phuong Le, Dinh Phong Phan, Hoai An Trinh, Tuan Viet Tran, Thi Lan Anh Luong, Ha Minh Nguyen, The-Hung Bui and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Risk of End-Stage Kidney Disease and Topiramate Use.Kidney international reports · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Hung Manh Pham *Center for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.
Duy Phuong Dang *Center for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.
Thanh Dat TaCenter for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.ORCID 0000-0002-3290-427X
Thi Phuong LeCenter for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.
Dinh Phong PhanCenter for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.
Hoai An TrinhHue Central Hospital, Hue, Vietnam.
Tuan Viet TranCenter for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.
Thi Lan Anh LuongCenter for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.
Ha Minh NguyenHue Central Hospital, Hue, Vietnam.
The-Hung BuiCenter for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.
Thinh Huy TranCenter for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.
Thanh Van TaCenter for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.
Van-Khanh TranCenter for Gene and Protein Research, Hanoi Medical University, Hanoi, Vietnam.ORCID 0000-0002-5059-8106
Hanoi Medical University · VNHue Central Hospital · VNKarolinska University Hospital · SEPham Ngoc Thach University of Medicine · VN

Funding

Ministry of Health of Vietnam 2723/QĐ-BYT
6 · The paper itself

Abstract

backgroundBrugada syndrome (BrS) is a rare genetic disease that causes sudden cardiac death (SCD) and arrhythmia. SCN5A pathogenic variants (about 30% of diagnosed patients) are responsible for BrS.

aimsLack of knowledge regarding molecular characteristics and the correlation between genotype and phenotype interfere with the risk stratification and finding the optimal treatment in Vietnam. Therefore, we identified SCN5A variants and evaluated the genotype-phenotype correlation of BrS on 117 Vietnamese probands. MATERIALS AND

methodsThe clinical characteristics and blood samples of BrS patients were collected. To determine SCN5A variants, Sanger sequencing was conducted, and subsequently, these variants were analyzed by bioinformatic tools.

resultsIn this cohort, the overall rate of detected variants in SCN5A was 25.6%, which could include both pathogenic and benign variants. In genetic testing, 21 SCN5A variants were identified, including eight novels and 15 published variants. Multiple bioinformatic tools were used to predict variant effect with c.551A>G, c.1890+14G>A, c.3338C>T, c.3578G>A, and c.5484C>T as benign, while other variants were predicted as disease-causing. The family history of SCD (risk ratio [RR] = 4.324, 95% CI: 2.290-8.269, p < 0.001), syncope (RR = 3.147, 95% CI: 1.668-5.982, p = 0.0004), and ventricular tachycardia/ventricular fibrillation (RR = 3.406, 95% CI: 1.722-5.400, p = 0.0035) presented a significantly higher risk in the SCN5A (+) group, consisting of individuals carrying any variant in the SCN5A gene, compared to SCN5A (-) individuals.

conclusionThe results contribute to clarifying the impact of SCN5A variants on these phenotypes. Further follow-up studies need to be carried out to understand the functional effects of these SCN5A variants on the severity of BrS.

Indexed as

Brugada SyndromeDeath, Sudden, CardiacGenetic Association StudiesGenetic TestingGenotypeHumansMutationNAV1.5 Voltage-Gated Sodium ChannelVentricular FibrillationNAV1.5 Voltage-Gated Sodium ChannelSCN5A protein, humanBrugada syndromegenotype-phenotype correlationin silicoSCN5A mutations

Identifiers

PMID37547970
PMCPMC10724507
OpenAlexW4385619876

What Socratic holds

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LicenceCC BY-NC-ND
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.