Evidence map›Paper›PMID 37549443›Full record

ArticleMolecular genetics and metabolism2023

Specifications of the ACMG/AMP guidelines for ACADVL variant interpretation.

May Flowers, Alexa Dickson, Marcus J Miller, Elaine Spector, Gregory Mark Enns, Heather Baudet, Marzia Pasquali, Lemuel Racacho, Kianoush Sadre-Bazzaz, Ting Wen and 6 more

Open access · greenAbstract read
In one paragraph

Article in Molecular genetics and metabolism, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 11 institutions in 2 countries.

May FlowersInvitae Corporation, San Francisco, CA 94103, USA.
Alexa DicksonDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO 63110, USA.
Marcus J MillerDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
Elaine SpectorDepartment of Pathology, University of Colorado School of Medicine, Aurora, CO 80045, USA; Section of Clinical Genetics and Metabolism, Department of Pediatrics, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Gregory Mark EnnsDivision of Medical Genetics, Department of Pediatrics, Lucile Packard Children's Hospital, Stanford University, Stanford, CA 94304, USA.
Heather BaudetDepartment of Genetics, University of North Carolina School of Medicine, Chapel Hill, NC 27599, USA.
Marzia PasqualiDepartment of Pathology, University of Utah, Salt Lake City, UT 84112, USA; ARUP Laboratories, Salt Lake City, UT 84108, USA.
Lemuel RacachoDepartment of Medical Genetics, Alberta Children's Hospital, Calgary, Alberta T3B6A8, Canada.
Kianoush Sadre-BazzazARUP Laboratories, Salt Lake City, UT 84108, USA.
Ting WenARUP Laboratories, Salt Lake City, UT 84108, USA.
Melissa FogartyARUP Laboratories, Salt Lake City, UT 84108, USA.
Raquel FernandezAmerican College of Medical Genetics and Genomics, Bethesda, MD 20814, USA.
Meredith A WeaverAmerican College of Medical Genetics and Genomics, Bethesda, MD 20814, USA.
Annette FeigenbaumDepartment of Pediatrics, Division of Genetics, Rady Children's Hospital and The University of California, San Diego, CA 92123, USA.
Brett H GrahamDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
Rong MaoDepartment of Pathology, University of Utah, Salt Lake City, UT 84112, USA; ARUP Laboratories, Salt Lake City, UT 84108, USA. Electronic address: rong.mao@aruplab.com.
ARUP Laboratories (United States) · USAmerican College of Medical Genetics · USIndiana University School of MedicineUniversity of Utah · USAlberta Children's Hospital · CAInvitae (United States) · USLucile Packard Children's Hospital · USUniversity of California San Diego · USUniversity of Colorado Denver · USUniversity of North Carolina at Chapel Hill · USWashington University in St. Louis · US

Funding

Baylor College of Medicine/Stanford University Clinical Genome Resource (CLINGEN)U24HG009649 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI TERI Ellen KLEIN, Aleksandar Milosavljevic · 2021 to 2026
$31.5M
The Clinical Genome Resource – Advancing genomic medicine through biocuration and expert assessment of genes and variants at scaleU24HG009650 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JONATHAN S BERG, Jessica Ezzell Hunter · 2021 to 2026
$30.0M
ClinGen AI Data Delivery SupplementU24HG006834 · NHGRI · BROAD INSTITUTE, INC. · PI Marina DiStefano, CHRISTA LESE MARTIN · 2021 to 2026
$26.7M
NHGRI NIH HHS U24 HG006834NHGRI NIH HHS U24 HG009649NHGRI NIH HHS U24 HG009650
6 · The paper itself

Abstract

Very long-chain acyl-CoA dehydrogenase (VLCAD) deficiency (VLCADD) is a relatively common inborn error of metabolism, but due to difficulty in accurately predicting affected status through newborn screening, molecular confirmation of the causative variants by sequencing of the ACADVL gene is necessary. Although the ACMG/AMP guidelines have helped standardize variant classification, ACADVL variant classification remains disparate due to a phenotype that can be nonspecific, the possibility of variants that produce late-onset disease, and relatively high carrier frequency, amongst other challenges. Therefore, an ACADVL-specific variant curation expert panel (VCEP) was created to facilitate the specification of the ACMG/AMP guidelines for VLCADD. We expect these guidelines to help streamline, increase concordance, and expedite the classification of ACADVL variants.

Indexed as

Lipid Metabolism, Inborn ErrorsMitochondrial DiseasesMuscular DiseasesAcyl-CoA Dehydrogenase, Long-ChainCongenital Bone Marrow Failure SyndromesGenetic TestingGenetic VariationHumansInfant, NewbornACADVL protein, humanAcyl-CoA Dehydrogenase, Long-ChainACADVLClinGenPathogenicityVariant interpretation

Identifiers

PMID37549443
PMCPMC10811274
OpenAlexW4385289007

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.