Evidence map›Paper›PMID 37555667›Full record

ArticlemBio2023

APOBEC3 degradation is the primary function of HIV-1 Vif determining virion infectivity in the myeloid cell line THP-1.

Terumasa Ikeda, Ryo Shimizu, Hesham Nasser, Michael A Carpenter, Adam Z Cheng, William L Brown, Daniel Sauter, Reuben S Harris

Open access · goldAbstract read
In one paragraph

Article in mBio, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 4 countries.

Terumasa Ikeda *Division of Molecular Virology and Genetics, Joint Research Center for Human Retrovirus Infection, Kumamoto University , Kumamoto, Japan.ORCID 0000-0003-2869-9450
Ryo Shimizu *Division of Molecular Virology and Genetics, Joint Research Center for Human Retrovirus Infection, Kumamoto University , Kumamoto, Japan.
Hesham NasserDivision of Molecular Virology and Genetics, Joint Research Center for Human Retrovirus Infection, Kumamoto University , Kumamoto, Japan.
Michael A CarpenterDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio , San Antonio, Texas, USA.
Adam Z ChengDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota , Minneapolis, Minnesota, USA.ORCID 0000-0001-6277-9433
William L BrownDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota , Minneapolis, Minnesota, USA.
Daniel SauterInstitute for Medical Virology and Epidemiology of Viral Diseases, University Hospital Tübingen , Tübingen, Germany.ORCID 0000-0001-7665-0040
Reuben S HarrisDepartment of Biochemistry and Structural Biology, University of Texas Health San Antonio , San Antonio, Texas, USA.ORCID 0000-0002-9034-9112
Howard Hughes Medical Institute · USKumamoto University · JPUniversity of Minnesota · USInstitute of Medical Microbiology and Hygiene · DESuez Canal University · EG

Funding

APOBEC3 Proteins in HIV RestrictionR37AI064046 · NIAID · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI HARRIS, REUBEN S · 2015 to 2024
$4.2M
Molecular Mechanisms of APOBEC-Induced Mutagenesis in CancerR37CA252081 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Remi Buisson · 2021 to 2026
$2.5M
Howard Hughes Medical InstituteNIAID NIH HHS R37 AI064046
6 · The paper itself

Abstract

HIV-1 must overcome multiple innate antiviral mechanisms to replicate in CD4

Indexed as

HIV-1HIV InfectionsAPOBEC-3G DeaminaseAPOBEC DeaminasesCell LineCytidine DeaminaseCytosine DeaminaseHumansMyeloid CellsProtein Bindingvif Gene Products, Human Immunodeficiency VirusVirionAPOBEC-3G DeaminaseAPOBEC DeaminasesCytidine DeaminaseCytosine Deaminasevif Gene Products, Human Immunodeficiency VirusAPOBEC3deaminase-dependent mechanismdeaminase-independent mechanismG-to-A mutationsHIV-1Vif

Identifiers

PMID37555667
PMCPMC10470580
OpenAlexW4385684712

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.