Evidence map›Paper›PMID 37556504›Full record

ArticlePloS one2023

Genomic screening of allelic and genotypic transmission ratio distortion in horse.

Nora Laseca, Ángela Cánovas, Mercedes Valera, Samir Id-Lahoucine, Davinia I Perdomo-González, Pablo A S Fonseca, Sebastián Demyda-Peyrás, Antonio Molina

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it, 3 citations in OpenAlex.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Nora LasecaDepartment of Genetics, University of Cordoba, Córdoba, Spain.ORCID 0000-0003-3753-6725
Ángela CánovasCenter of Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, Ontario, Canada.
Mercedes ValeraDepartment of Agronomy, School of Agronomy Engineering, University of Seville, Seville, Spain.
Samir Id-LahoucineDepartment of Animal and Veterinary Science, Scotland's Rural College, Aberdeen, Scotland, United Kingdom.
Davinia I Perdomo-GonzálezDepartment of Agronomy, School of Agronomy Engineering, University of Seville, Seville, Spain.ORCID 0000-0003-2618-105X
Pablo A S FonsecaDepartment of Animal Production, University of Leon, León, Spain.
Sebastián Demyda-PeyrásDepartment of Genetics, University of Cordoba, Córdoba, Spain.
Antonio MolinaDepartment of Genetics, University of Cordoba, Córdoba, Spain.
University of Córdoba · ESUniversidad de Sevilla · ESScotland's Rural College · GBUniversidad de León · ESUniversity of Guelph · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The phenomenon in which the expected Mendelian inheritance is altered is known as transmission ratio distortion (TRD). The TRD analysis relies on the study of the transmission of one of the two alleles from a heterozygous parent to the offspring. These distortions are due to biological mechanisms affecting gametogenesis, embryo development and/or postnatal viability, among others. In this study, TRD phenomenon was characterized in horses using SNP-by-SNP model by TRDscan v.2.0 software. A total of 1,041 Pura Raza Español breed horses were genotyped with 554,634 SNPs. Among them, 277 horses genotyped in trios (stallion-mare-offspring) were used to perform the TRD analysis. Our results revealed 140 and 42 SNPs with allelic and genotypic patterns, respectively. Among them, 63 displayed stallion-TRD and 41 exhibited mare-TRD, while 36 SNPs showed overall TRD. In addition, 42 SNPs exhibited heterosis pattern. Functional analyses revealed that the annotated genes located within the TRD regions identified were associated with biological processes and molecular functions related to spermatogenesis, oocyte division, embryonic development, and hormonal activity. A total of 10 functional candidate genes related to fertility were found. To our knowledge, this is the most extensive study performed to evaluate the presence of alleles and functional candidate genes with transmission ratio distortion affecting reproductive performance in the domestic horse.

Indexed as

GenomicsInheritance PatternsAllelesAnimalsFemaleGenotypeHeterozygoteHorsesMale

Identifiers

PMID37556504
PMCPMC10411798
OpenAlexW4385693265

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.