Evidence map›Paper›PMID 37576973›Full record

ArticleFrontiers in endocrinology2023

The proteome and phosphoproteome of circulating extracellular vesicle-enriched preparations are associated with characteristic clinical features in type 1 diabetes.

Anna Casu, Yury O Nunez Lopez, Gongxin Yu, Christopher Clifford, Anika Bilal, Alejandra M Petrilli, Heather Cornnell, Elvis Alvarez Carnero, Ananya Bhatheja, Karen D Corbin and 3 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Frontiers in endocrinology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03379792 (The Influence of Glycemic Control and Obesity on Energy Balance and Metabolic Flexibility in Type 1 Diabetes), which is not on this map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03379792 completednot on this map

The Influence of Glycemic Control and Obesity on Energy Balance and Metabolic Flexibility in Type 1 Diabetes

TypeobservationalSponsorAdventHealth Translational Research InstituteRan2018 to 2020Enrolled32ConditionsType 1 Diabetes
3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Anna CasuAdventHealth, Translational Research Institute (TRI), Orlando, FL, United States.
Yury O Nunez LopezAdventHealth, Translational Research Institute (TRI), Orlando, FL, United States.
Gongxin YuAdventHealth, Translational Research Institute (TRI), Orlando, FL, United States.
Christopher CliffordAdventHealth, Translational Research Institute (TRI), Orlando, FL, United States.
Anika BilalAdventHealth, Translational Research Institute (TRI), Orlando, FL, United States.
Alejandra M PetrilliAdventHealth, Translational Research Institute (TRI), Orlando, FL, United States.
Heather CornnellAdventHealth, Translational Research Institute (TRI), Orlando, FL, United States.
Elvis Alvarez CarneroAdventHealth, Translational Research Institute (TRI), Orlando, FL, United States.
Ananya BhathejaAdventHealth, Translational Research Institute (TRI), Orlando, FL, United States.
Karen D CorbinAdventHealth, Translational Research Institute (TRI), Orlando, FL, United States.
Anton IliukBiomarker Discovery Department, Tymora Analytical Operations, West Lafayette, IN, United States.
David M MaahsDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA, United States.
Richard E PratleyAdventHealth, Translational Research Institute (TRI), Orlando, FL, United States.
Translational Research Institute for Metabolism and Diabetes · USStanford University · USTymora Analytical Operations (United States) · US

Funding

Stanford Islet Research CoreP30DK116074 · NIDDK · STANFORD UNIVERSITY · PI Seung K Kim · 2017 to 2026
$19.5M
Accelerating Solutions to Optimize Glycemic Control and Weight Management In Young Adults with Type 1 DiabetesDP3DK113358 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MAAHS, DAVID MATTHEW, MAYER-DAVIS, ELIZABETH J · 2017 to 2017
$1.9M
Development of non-invasive biomarker discovery and diagnostics approach for bladder cancer based on urine proteome and phosphoproteomeR44CA239845 · NCI · TYMORA ANALYTICAL OPERATIONS, LLC · PI ILIUK, ANTON · 2019 to 2021
$1.5M
NCI NIH HHS R44 CA239845NIDDK NIH HHS DP3 DK113358NIDDK NIH HHS P30 DK116074
6 · The paper itself

Abstract

Introduction: There are no validated clinical or laboratory biomarkers to identify and differentiate endotypes of type 1 diabetes (T1D) or the risk of progression to chronic complications. Extracellular vesicles (EVs) have been studied as biomarkers in several different disease states but have not been well studied in T1D. Methods: As the initial step towards circulating biomarker identification in T1D, this pilot study aimed to provide an initial characterization of the proteomic and phosphoproteomic landscape of circulating EV-enriched preparations in participants with established T1D (N=10) and healthy normal volunteers (Controls) (N=7) (NCT03379792) carefully matched by age, race/ethnicity, sex, and BMI. EV-enriched preparations were obtained using EVtrap Results: The detected proteins and phosphoproteins were enriched (75%) in exosomal proteins cataloged in the ExoCarta database. A total of 181 proteins and 8 phosphoproteins were differentially abundant in participants with T1D compared to controls, including some well-known EVproteins (i.e., CD63, RAB14, BSG, LAMP2, and EZR). Enrichment analyses of differentially abundant proteins and phosphoproteins of EV-enriched preparations identified associations with neutrophil, platelet, and immune response functions, as well as prion protein aggregation. Downregulated proteins were involved in MHC class II signaling and the regulation of monocyte differentiation. Potential key roles in T1D for C1q, plasminogen, IL6ST, CD40, HLA-DQB1, HLA-DRB1, CD74, NUCB1, and SAP, are highlighted. Remarkably, WGCNA uncovered two protein modules significantly associated with pancreas size, which may be implicated in the pathogenesis of T1D. Similarly, these modules showed significant enrichment for membrane compartments, processes associated with inflammation and the immune response, and regulation of viral processes, among others. Discussion: This study demonstrates the potential of proteomic and phosphoproteomic signatures of EV-enriched preparations to provide insight into the pathobiology of T1D. The WGCNA analysis could be a powerful tool to discriminate signatures associated with different pathobiological components of the disease.

Indexed as

Diabetes Mellitus, Type 1Extracellular VesiclesBiomarkersHumansPhosphoproteinsPilot ProjectsProteomeProteomicsBiomarkersPhosphoproteinsProteomeextracellular vesicleshumanphosphoproteomicsproteomicstype 1 diabetes

Identifiers

PMID37576973
PMCPMC10417723
OpenAlexW4385340989

What Socratic holds

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LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.