Evidence map›Paper›PMID 37593000›Full record

ArticleChemical science2023

Combining native mass spectrometry and lipidomics to uncover specific membrane protein-lipid interactions from natural lipid sources.

Yun Zhu, Melanie T Odenkirk, Pei Qiao, Tianqi Zhang, Samantha Schrecke, Ming Zhou, Michael T Marty, Erin S Baker, Arthur Laganowsky

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Discovery of Therapeutic Antibodies Targeting Complex Multi-Spanning Membrane Proteins.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2024
    Review
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Yun ZhuDepartment of Chemistry, Texas A&M University College Station TX 77843 USA alaganowsky@chem.tamu.edu.
Melanie T OdenkirkDepartment of Chemistry, North Carolina State University Raleigh NC 27695 USA.ORCID https://orcid.org/0000-0003-4526-5152
Pei QiaoDepartment of Chemistry, Texas A&M University College Station TX 77843 USA alaganowsky@chem.tamu.edu.
Tianqi ZhangDepartment of Chemistry, Texas A&M University College Station TX 77843 USA alaganowsky@chem.tamu.edu.
Samantha SchreckeDepartment of Chemistry, Texas A&M University College Station TX 77843 USA alaganowsky@chem.tamu.edu.ORCID https://orcid.org/0000-0002-5228-0310
Ming ZhouVerna and Marrs McLean Department of Biochemistry and Molecular Pharmacology, Baylor College of Medicine Houston TX 77030 USA.ORCID https://orcid.org/0000-0001-7198-165X
Michael T MartyDepartment of Chemistry and Biochemistry, The University of Arizona Tucson AZ 85721 USA.ORCID https://orcid.org/0000-0001-8115-1772
Erin S BakerDepartment of Chemistry, University of North Carolina Chapel Hill NC 27514 USA erinmsb@unc.edu.ORCID https://orcid.org/0000-0001-5246-2213
Arthur LaganowskyDepartment of Chemistry, Texas A&M University College Station TX 77843 USA alaganowsky@chem.tamu.edu.ORCID https://orcid.org/0000-0001-5012-5547
Texas A&M University · USBaylor College of Medicine · USNorth Carolina State University · USUniversity of Arizona · USUniversity of North Carolina at Chapel Hill · US

Funding

Understanding the role of lipids in structure and function of membrane proteinsRM1GM145416 · NIGMS · TEXAS A&M UNIVERSITY · PI Erin S Baker, Arthur D Laganowsky · 2022 to 2026
$7.4M
Unravelling Membrane Protein-Lipid Interactions using Nanodiscs and Mass SpectrometryR35GM128624 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI Michael T Marty · 2018 to 2026
$3.6M
Structure and mechanism of mammalian stearoyl-CoA desaturasesR01DK122784 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI TSAI, AH-LIM, ZHOU, MING · 2019 to 2023
$3.2M
Development of high resolution mobility measurements for structural biologyR01GM121751 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI CLEMMER, DAVID E., LAGANOWSKY, ARTHUR D · 2017 to 2020
$1.7M
Increasing the Coverage, Sensitivity and Specificity of Rapid Lipidomic MeasurementsR01GM141277 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BAKER, ERIN S · 2022 to 2025
$1.2M
Innovative Native Ion Mobility Approaches for Transformational Measurements in Structural BiologyR01GM138863 · NIGMS · TEXAS A&M UNIVERSITY · PI CLOWERS, BRIAN, LAGANOWSKY, ARTHUR D · 2020 to 2023
$1.2M
NIDDK NIH HHS R01 DK122784NIGMS NIH HHS R01 GM121751NIGMS NIH HHS R01 GM138863NIGMS NIH HHS R01 GM141277NIGMS NIH HHS R35 GM128624NIGMS NIH HHS RM1 GM145416
6 · The paper itself

Abstract

While it is known that lipids play an essential role in regulating membrane protein structure and function, it remains challenging to identify specific protein-lipid interactions. Here, we present an innovative approach that combines native mass spectrometry (MS) and lipidomics to identify lipids retained by membrane proteins from natural lipid extracts. Our results reveal that the bacterial ammonia channel (AmtB) enriches specific cardiolipin (CDL) and phosphatidylethanolamine (PE) from natural headgroup extracts. When the two extracts are mixed, AmtB retains more species, wherein selectivity is tuned to bias headgroup selection. Using a series of natural headgroup extracts, we show TRAAK, a two-pore domain K

Identifiers

PMID37593000
PMCPMC10430552
OpenAlexW4385153775

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.