Evidence map›Paper›PMID 37594266›Full record

ArticleMicrobiology spectrum2023

La-related protein 4 is enriched in vaccinia virus factories and is required for efficient viral replication in primary human fibroblasts.

Pragyesh Dhungel, Djamal Brahim Belhaouari, Zhilong Yang

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Pragyesh DhungelDivision of Biology, Kansas State University , Manhattan, Kansas, USA.
Djamal Brahim BelhaouariDepartment of Veterinary Pathobiology, School of Veterinary Medicine & Biomedical Sciences, Texas A&M University , College Station, Texas, USA.
Zhilong YangDivision of Biology, Kansas State University , Manhattan, Kansas, USA.ORCID 0000-0001-8995-2654
Kansas State University · USTexas A&M Health Science Center · USTexas A&M University · US

Funding

Mechanisms regulating poxvirus post-replicative protein synthesisR01AI143709 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI YANG, ZHILONG · 2019 to 2023
$1.9M
Selective translation conferred by the poly(A) leader of vaccinia virus mRNAsR21AI128406 · NIAID · KANSAS STATE UNIVERSITY · PI YANG, ZHILONG · 2017 to 2018
$413k
HHS | National Institutes of Health (NIH) R01AI143709NIAID NIH HHS R01 AI143709NIAID NIH HHS R21 AI128406
6 · The paper itself

Abstract

importanceVaccinia virus, the prototype poxvirus, encodes over 200 open reading frames (ORFs). Over 90 of vaccinia virus ORFs are transcribed post-viral DNA replication. All these mRNAs contain a 5'-poly(A) leader, as well as a 3'-poly(A) tail. They are synthesized in viral factories, where vaccinia virus DNA replication, mRNA synthesis, and translation occur. However, surprisingly, the poly(A) binding protein, PABPC1, that is important for mRNA metabolism and translation is not present in the viral factories, suggesting other poly(A) binding protein(s) may be present in viral factories. Here, we found another poly(A)-binding protein, La-related protein 4 (LARP4), enriched in viral factories during vaccinia virus infection. We also showed that LARP4 enrichment in the viral factories depends on viral post-replicative gene expression and functional viral decapping enzymes. The knockdown of LARP4 expression in human foreskin fibroblasts reduced vaccinia virus DNA replication, post-replicative gene expression, and viral production.

Indexed as

5’-poly(A) leaderDNA replicationLARP4poxvirusprotein synthesisvaccinia virusviral factory

Identifiers

PMID37594266
PMCPMC10581054
OpenAlexW4385969168

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.