Evidence map›Paper›PMID 37605285›Full record

ArticleStem cell research & therapy2023

APOE deficiency impacts neural differentiation and cholesterol biosynthesis in human iPSC-derived cerebral organoids.

Jing Zhao, Tadafumi C Ikezu, Wenyan Lu, Jesse R Macyczko, Yonghe Li, Laura J Lewis-Tuffin, Yuka A Martens, Yingxue Ren, Yiyang Zhu, Yan W Asmann and 3 more

Open access · goldAbstract read
In one paragraph

Article in Stem cell research & therapy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. [Role of dysregulation brain lipid metabolism in depression].Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2025
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Human Brain Organoids: Development and Applications.Journal of microbiology and biotechnology · 2025
    Review
  11. Article
  12. Review
  13. Article
  14. Proteins linking APOE ɛ4 with Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2024
    Article
  15. Frontiers in molecular neuroscience · 2024
    Article
  16. Review
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Jing ZhaoDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA. zjing.0321@gmail.com.ORCID http://orcid.org/0000-0002-4520-6307
Tadafumi C IkezuDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Wenyan LuDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Jesse R MacyczkoDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Yonghe LiDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Laura J Lewis-TuffinCytometry and Cell Imaging Laboratory, Mayo Clinic, Jacksonville, FL, USA.
Yuka A MartensDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Yingxue RenDepartment of Quantitative Health Sciences, Mayo Clinic, Jacksonville, FL, 32224, USA.
Yiyang ZhuDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Yan W AsmannDepartment of Quantitative Health Sciences, Mayo Clinic, Jacksonville, FL, 32224, USA.
Nilüfer Ertekin-TanerDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Takahisa KanekiyoDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Guojun BuDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA. Guojun.Bu@MolecularNeurodegeneration.org.
Mayo Clinic in Florida · USJacksonville College · US

Funding

Peripheral and Central Biomarkers of Alzheimer's Disease in Diverse CohortsU19AG074879 · NIA · MAYO CLINIC JACKSONVILLE · PI Minerva Maria Carrasquillo, NILUFER ERTEKIN-TANER · 2023 to 2026
$42.0M
Project 4 (Genetic modifiers for APOE-associated Alzheimer's disease pathogenesis)U19AG069701 · NIA · MAYO CLINIC JACKSONVILLE · PI ALISON M GOATE, DAVID M. HOLTZMAN · 2021 to 2026
$42.0M
Utilization of proteomics and lipidomics to identify modifiers of LBDU54NS110435 · NINDS · MAYO CLINIC JACKSONVILLE · PI MCLEAN, PAMELA J · 2019 to 2023
$14.5M
Viral Vectors CoreP01NS074969 · NINDS · WASHINGTON UNIVERSITY · PI CIRRITO, JOHN R · 2012 to 2021
$13.0M
Harnessing Molecular Networks of Resilience for Therapeutic Discoveries in ADR01AG061796 · NIA · MAYO CLINIC JACKSONVILLE · PI ERTEKIN-TANER, NILUFER · 2018 to 2022
$5.7M
Impact of ApoE2 on aging-related conditionsRF1AG057181 · NIA · MAYO CLINIC JACKSONVILLE · PI KANEKIYO, TAKAHISA · 2018 to 2018
$3.7M
ApoE isoform-specific therapy for Alzheimer diseaseRF1AG046205 · NIA · MAYO CLINIC JACKSONVILLE · PI ZHAO, NA · 2019 to 2019
$3.1M
ApoE pathway in cerebrovascular Aβ clearance in Alzheimer’s diseaseR37AG027924 · NIA · MAYO CLINIC JACKSONVILLE · PI BU, GUOJUN · 2017 to 2020
$2.4M
Neuronal ABCA7 loss of function and Alzheimer’s diseaseRF1AG081203 · NIA · MAYO CLINIC JACKSONVILLE · PI KANEKIYO, TAKAHISA · 2023 to 2023
$2.1M
Enhanced APOE2 Expression into Brain for Therapeutic Strategy for Alzheimer's DiseaseRF1AG068034 · NIA · NORTH DAKOTA STATE UNIVERSITY · PI KANEKIYO, TAKAHISA, SINGH, JAGDISH · 2021 to 2022
$1.6M
Endothelial cell senescence and APOE4 in vascular cognitive impairment and dementiaR01AG071226 · NIA · MAYO CLINIC JACKSONVILLE · PI KANEKIYO, TAKAHISA · 2024 to 2025
$775k
NIA NIH HHS R01 AG061796NIA NIH HHS R01 AG071226NIA NIH HHS R37 AG027924NIA NIH HHS RF1 AG046205NIA NIH HHS RF1 AG057181NIA NIH HHS RF1 AG068034NIA NIH HHS RF1 AG081203NIA NIH HHS U19 AG069701NIA NIH HHS U19 AG074879NINDS NIH HHS P01 NS074969NINDS NIH HHS U54 NS110435
6 · The paper itself

Abstract

backgroundThe apolipoprotein E (APOE) gene is the strongest genetic risk factor for Alzheimer's disease (AD); however, how it modulates brain homeostasis is not clear. The apoE protein is a major lipid carrier in the brain transporting lipids such as cholesterol among different brain cell types.

methodsWe generated three-dimensional (3-D) cerebral organoids from human parental iPSC lines and its isogenic APOE-deficient (APOE

resultsWe show that APOE deficiency in human iPSC-derived cerebral organoids impacts brain lipid homeostasis by modulating multiple cellular and molecular pathways. Molecular profiling through single-cell RNA sequencing revealed that APOE deficiency leads to changes in cellular composition of isogenic cerebral organoids likely by modulating the eukaryotic initiation factor 2 (EIF2) signaling pathway as these events were alleviated by the treatment of an integrated stress response inhibitor (ISRIB). APOE deletion also leads to activation of the Wnt/β-catenin signaling pathway with concomitant decrease of secreted frizzled-related protein 1 (SFRP1) expression in glia cells. Importantly, the critical role of apoE in cell-type-specific lipid homeostasis was observed upon APOE deletion in cerebral organoids with a specific upregulation of cholesterol biosynthesis in excitatory neurons and excessive lipid accumulation in astrocytes. Relevant to human AD, APOE4 cerebral organoids show altered neurogenesis and cholesterol metabolism compared to those with APOE3.

conclusionsOur work demonstrates critical roles of apoE in brain homeostasis and offers critical insights into the APOE4-related pathogenic mechanisms.

Indexed as

Apolipoproteins ECerebrumInduced Pluripotent Stem CellsApolipoprotein E4Cell DifferentiationHumansOrganoidsApolipoprotein E4Apolipoproteins EApolipoprotein ECerebral organoidCholesterol biosynthesisNeural differentiationscRNA-seq

Identifiers

PMID37605285
PMCPMC10441762
OpenAlexW4386033342

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.