Evidence map›Paper›PMID 37625399›Full record

ArticleStructure (London, England : 1993)2023

SARS-CoV-2 fusion peptide sculpting of a membrane with insertion of charged and polar groups.

Steven R Van Doren, Benjamin S Scott, Rama K Koppisetti

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. SARS-CoV-2 FP1 Destabilizes Lipid Membranes and Facilitates Pore Formation.International journal of molecular sciences · 2025
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Steven R Van DorenDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA; Institute for Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA. Electronic address: vandorens@missouri.edu.
Benjamin S ScottDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.
Rama K KoppisettiDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.

Funding

TRD3 NMRbox: Bayesian AnalyticsP41GM111135 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2015 to 2024
$14.0M
800 MHZ SPECTROMETER FOR BIOMOLECULAR NMR: STRUCTURAL BIOLOGYS10RR022341 · NCRR · UNIVERSITY OF MISSOURI-COLUMBIA · PI VAN DOREN, STEVEN R · 2006 to 2006
$500k
NCRR NIH HHS S10 RR022341NIGMS NIH HHS P41 GM111135
6 · The paper itself

Abstract

The fusion peptide of SARS-CoV-2 spike is essential for infection. How this charged and hydrophobic domain occupies and affects membranes needs clarification. Its depth in zwitterionic, bilayered micelles at pH 5 (resembling late endosomes) was measured by paramagnetic NMR relaxation enhancements used to bias molecular dynamics simulations. Asp830 inserted deeply, along with Lys825 or Lys835. Protonation of Asp830 appeared to enhance agreement of simulated and NMR-measured depths. While the fusion peptide occupied a leaflet of the DMPC bilayer, the opposite leaflet invaginated with influx of water and choline head groups in around Asp830 and bilayer-inserted polar side chains. NMR-detected hydrogen exchange found corroborating hydration of the backbone of Thr827-Phe833 inserted deeply in bicelles. Pinching of the membrane at the inserted charge and the intramembrane hydration of polar groups agree with theory. Formation of corridors of hydrated, inward-turned head groups was accompanied by flip-flop of head groups. Potential roles of the defects are discussed.

Indexed as

COVID-19Lipid BilayersHumansMicellesPeptidesSARS-CoV-2Lipid BilayersMicellesPeptidescharge in membranefusion peptideheadgroup intrusionhydration in membranelipid flip-floplipid tail protrusionmembrane thinningmolecular dynamicsparamagnetic NMR relaxationviral-cell fusion

Identifiers

PMID37625399
PMCPMC10592393

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.