Evidence map›Paper›PMID 37628973›Full record

ArticleInternational journal of molecular sciences2023

Identification of Host PDZ-Based Interactions with the SARS-CoV-2 E Protein in Human Monocytes.

Antonia Ávila-Flores, Juan José Sánchez-Cabezón, Ane Ochoa-Echeverría, Ana I Checa, Jorge Rosas-García, Mariana Téllez-Araiza, Sara Casado, Rosa Liébana, Teresa Santos-Mendoza, Isabel Mérida

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Structural proteins of human coronaviruses: what makes them different?Frontiers in cellular and infection microbiology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Antonia Ávila-FloresDepartment of Immunology and Oncology, Spanish National Centre for Biotechnology, 28049 Madrid, Spain.ORCID 0000-0001-6278-2472
Juan José Sánchez-CabezónDepartment of Immunology and Oncology, Spanish National Centre for Biotechnology, 28049 Madrid, Spain.
Ane Ochoa-EcheverríaDepartment of Immunology and Oncology, Spanish National Centre for Biotechnology, 28049 Madrid, Spain.ORCID 0009-0001-8477-4243
Ana I ChecaDepartment of Immunology and Oncology, Spanish National Centre for Biotechnology, 28049 Madrid, Spain.
Jorge Rosas-GarcíaLaboratory of Transcriptomics and Molecular Immunology, Instituto Nacional de Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City 14080, Mexico.
Mariana Téllez-AraizaLaboratory of Transcriptomics and Molecular Immunology, Instituto Nacional de Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City 14080, Mexico.
Sara CasadoDepartment of Immunology and Oncology, Spanish National Centre for Biotechnology, 28049 Madrid, Spain.ORCID 0000-0002-7018-9772
Rosa LiébanaDepartment of Immunology and Oncology, Spanish National Centre for Biotechnology, 28049 Madrid, Spain.
Teresa Santos-MendozaLaboratory of Transcriptomics and Molecular Immunology, Instituto Nacional de Enfermedades Respiratorias Ismael Cosío Villegas, Mexico City 14080, Mexico.ORCID 0000-0003-1015-5631
Isabel MéridaDepartment of Immunology and Oncology, Spanish National Centre for Biotechnology, 28049 Madrid, Spain.ORCID 0000-0003-2762-6241
Spanish National Centre for Cardiovascular Research · ESInstituto Nacional de Enfermedades Respiratorias · MX

Funding

European Commission to IM; Spanish Ministry of Science and Innovation (MINECO) to AAF and IM, the Jesus Serra Foundation to AAF; and the Mexican National Council of Science and Technology (CONACyT) to TSM. European Commission - Next Generation EU (Regulation EU 2020/2094) through CSIC's Global Health Platform (PTI Salud Global); and grants from the Spanish Ministry of Sciece; MINECO PID2019-108357RB-I00/10.13039/501100011033); CONACyT CB2015-250579.
6 · The paper itself

Abstract

Proteins containing PDZ (post-synaptic density, PSD-95/disc large, Dlg/zonula occludens, ZO-1) domains assemble signaling complexes that orchestrate cell responses. Viral pathogens target host PDZ proteins by coding proteins containing a PDZ-binding motif (PBM). The presence of a PBM in the SARS-CoV-2 E protein contributes to the virus's pathogenicity. SARS-CoV-2 infects epithelia, but also cells from the innate immune response, including monocytes and alveolar macrophages. This process is critical for alterations of the immune response that are related to the deaths caused by SARS-CoV-2. Identification of E-protein targets in immune cells might offer clues to understanding how SARS-CoV-2 alters the immune response. We analyzed the interactome of the SARS-CoV-2 E protein in human monocytes. The E protein was expressed fused to a GFP tag at the amino terminal in THP-1 monocytes, and associated proteins were identified using a proteomic approach. The E-protein interactome provided 372 partners; only 8 of these harbored PDZ domains, including the cell polarity protein ZO-2, the chemoattractant IL-16, and syntenin. We addressed the expression and localization of the identified PDZ proteins along the differentiation of primary and THP-1 monocytes towards macrophages and dendritic cells. Our data highlight the importance of identifying the functions of PDZ proteins in the maintenance of immune fitness and the viral alteration of inflammatory response.

Indexed as

COVID-19MonocytesHumansMacrophagesProteomicsSARS-CoV-2Transcription FactorsTranscription Factorsenvelope (E) proteinIL-16innate immune responsemonocytePDZSARS-CoV-2synteninZO-2

Identifiers

PMID37628973
PMCPMC10454406
OpenAlexW4385795818

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.