Evidence map›Paper›PMID 37653486›Full record

ArticleMalaria journal2023

Development of a Plasmodium vivax biobank for functional ex vivo assays.

Rashmi Dash, Kristen M Skillman, Ligia Pereira, Anjali Mascarenhas, Sheena Dass, Jayashri Walke, Anvily Almeida, Mezia Fernandes, Edwin Gomes, John White and 5 more

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 80% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 0 citations in OpenAlex.

  1. Article
  2. First Evidence of Anti-Biomedicines · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Rashmi DashGoa Medical College and Hospital, Bambolim, Goa, 403202, India.
Kristen M SkillmanDepartment of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, 02115, USA.
Ligia PereiraGoa Medical College and Hospital, Bambolim, Goa, 403202, India.
Anjali MascarenhasGoa Medical College and Hospital, Bambolim, Goa, 403202, India.
Sheena DassDepartment of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, 02115, USA.
Jayashri WalkeGoa Medical College and Hospital, Bambolim, Goa, 403202, India.
Anvily AlmeidaGoa Medical College and Hospital, Bambolim, Goa, 403202, India.
Mezia FernandesGoa Medical College and Hospital, Bambolim, Goa, 403202, India.
Edwin GomesGoa Medical College and Hospital, Bambolim, Goa, 403202, India.
John WhiteDepartments of Chemistry and Global Health, University of Washington, Seattle, WA, 98195, USA.
Laura Chery-KarschneyDepartments of Chemistry and Global Health, University of Washington, Seattle, WA, 98195, USA.
Anar KhandeparkarGoa Medical College and Hospital, Bambolim, Goa, 403202, India.
Pradipsinh K RathodDepartments of Chemistry and Global Health, University of Washington, Seattle, WA, 98195, USA.
Manoj T DuraisinghDepartment of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, 02115, USA.
Usheer KanjeeDepartment of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, 02115, USA. ukanjee@hsph.harvard.edu.
Goa Medical College · INHarvard University · USUniversity of Washington · US

Funding

Shared TechnologyU19AI089688 · NIAID · UNIVERSITY OF WASHINGTON · PI RATHOD, PRADIPSINH K. · 2010 to 2023
$22.4M
NIAID NIH HHS U19 AI089688NIH HHS 5U19AI089688-13
6 · The paper itself

Abstract

backgroundPlasmodium vivax is the second most prevalent cause of malaria yet remains challenging to study due to the lack of a continuous in vitro culture system, highlighting the need to establish a biobank of clinical isolates with multiple freezes per sample for use in functional assays. Different methods for cryopreserving parasite isolates were compared and subsequently the most promising one was validated. Enrichment of early- and late-stage parasites and parasite maturation were quantified to facilitate assay planning.

methodsIn order to compare cryopreservation protocols, nine clinical P. vivax isolates were frozen with four glycerolyte-based mixtures. Parasite recovery post thaw, post KCl-Percoll enrichment and in short-term in vitro culture was measured via slide microscopy. Enrichment of late-stage parasites by magnetic activated cell sorting (MACS) was measured. Short and long-term storage of parasites at either - 80 °C or liquid nitrogen were also compared.

resultsOf the four cryopreservation mixtures, one mixture (glycerolyte:serum:RBC at a 2.5:1.5:1 ratio) resulted in improved parasite recovery and statistically significant (P < 0.05) enhancement in parasite survival in short-term in vitro culture. A parasite biobank was subsequently generated using this protocol resulting in a collection of 106 clinical isolates, each with 8 vials. The quality of the biobank was validated by measuring several factors from 47 thaws: the average reduction in parasitaemia post-thaw (25.3%); the average fold enrichment post KCl-Percoll (6.65-fold); and the average percent recovery of parasites (22.0%, measured from 30 isolates). During short-term in vitro culture, robust maturation of ring stage parasites to later stages (> 20% trophozoites, schizonts and gametocytes) was observed in 60.0% of isolates by 48 h. Enrichment of mature parasite stages via MACS showed good reproducibility, with an average of 30.0% post-MACS parasitaemia and an average of 5.30 × 10

conclusionsHere, an optimized freezing method for P. vivax clinical isolates is demonstrated as a template for the generation and validation of a parasite biobank for use in functional assays.

Indexed as

Malaria, VivaxPlasmodium vivaxBiological Specimen BanksHumansParasitemiaPovidoneReproducibility of ResultsSilicon DioxidePercollPovidoneSilicon DioxideBiobankCryopreservationPlasmodium vivaxShort-term culture

Identifiers

PMID37653486
PMCPMC10470152
OpenAlexW4386328981

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.