Evidence map›Paper›PMID 37694881›Full record

ArticleJournal of the American Society for Mass Spectrometry2023

Localization and Quantification of Post-Translational Modifications of Proteins Using Electron Activated Dissociation Fragmentation on a Fast-Acquisition Time-of-Flight Mass Spectrometer.

Joanna Bons, Christie L Hunter, Rita Chupalov, Jason Causon, Alexandra Antonoplis, Jacob Rose, Brendan MacLean, Birgit Schilling

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Ion Mobility-Assisted Free Radical-Initiated Peptide Sequencing.International journal of mass spectrometry · 2025
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Joanna BonsBuck Institute for Research on Aging, Novato, California 94947, United States.
Christie L HunterSCIEX, Redwood City, California 94065, United States.ORCID 0000-0003-2587-1489
Rita ChupalovDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195, United States.
Jason CausonSCIEX, Concord, Ontario L4K 4V8, Canada.ORCID 0000-0003-2760-8115
Alexandra AntonoplisSCIEX, Redwood City, California 94065, United States.
Jacob RoseBuck Institute for Research on Aging, Novato, California 94947, United States.
Brendan MacLeanDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195, United States.
Birgit SchillingBuck Institute for Research on Aging, Novato, California 94947, United States.ORCID 0000-0001-9907-2749
Buck Institute for Research on Aging · USUniversity of Washington · US

Funding

Seattle Quant: A Resource for the Skyline Software EcosystemR24GM141156 · NIGMS · UNIVERSITY OF WASHINGTON · PI Michael MacCoss · 2021 to 2026
$6.7M
NIGMS NIH HHS R24 GM141156
6 · The paper itself

Abstract

Protein post-translational modifications (PTMs) are crucial and dynamic players in a large variety of cellular processes and signaling. Proteomic technologies have emerged as the method of choice to profile PTMs. However, these analyses remain challenging due to potential low PTM stoichiometry, the presence of multiple PTMs per proteolytic peptide, PTM site localization of isobaric peptides, and neutral losses. Collision-induced dissociation (CID) is commonly used to characterize PTMs, but the application of collision energy can lead to neutral losses and incomplete peptide sequencing for labile PTM groups. In this study, we assessed the performance of an alternative fragmentation, electron activated dissociation (EAD), to characterize, site localize, and quantify peptides with labile modifications in comparison to CID, both operated on a recently introduced fast-scanning quadrupole-time-of-flight (QqTOF) mass spectrometer. We analyzed biologically relevant phosphorylated, succinylated, malonylated, and acetylated synthetic peptides using targeted parallel reaction monitoring (PRM or MRM

Indexed as

ElectronsTandem Mass SpectrometryPeptidesProtein Processing, Post-TranslationalProteinsProteomicsReproducibility of ResultsPeptidesProteins

Identifiers

PMID37694881
PMCPMC11157679
OpenAlexW4386592775

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.