Evidence map›Paper›PMID 37700389›Full record

ArticleEuropean journal of medical research2023

Development and validation of a kidney renal clear cell carcinoma prognostic model relying on pyroptosis-related LncRNAs-A multidimensional comprehensive bioinformatics exploration.

Chang Liu, Shuxin Dai, Hao Geng, Zhiwei Jiang, Xiangyu Teng, Kun Liu, Zhouting Tuo, Longfei Peng, Chao Yang, Liangkuan Bi

Open access · goldAbstract read
In one paragraph

Article in European journal of medical research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Chang Liu *Department of Urology, The Second Hospital of Anhui Medical University, Hefei, Anhui, China.
Shuxin Dai *Department of Urology, The Second Hospital of Anhui Medical University, Hefei, Anhui, China.
Hao Geng *Department of Urology, The Second Hospital of Anhui Medical University, Hefei, Anhui, China.
Zhiwei JiangDepartment of Urology, The Second Hospital of Anhui Medical University, Hefei, Anhui, China.
Xiangyu TengDepartment of Urology, The Second Hospital of Anhui Medical University, Hefei, Anhui, China.
Kun LiuDepartment of Urology, The Second Hospital of Anhui Medical University, Hefei, Anhui, China.
Zhouting TuoDepartment of Urology, The Second Hospital of Anhui Medical University, Hefei, Anhui, China.
Longfei PengDepartment of Urology, The Second Hospital of Anhui Medical University, Hefei, Anhui, China.
Chao YangDepartment of Urology, The Second Hospital of Anhui Medical University, Hefei, Anhui, China. shineyangchao@126.com.
Liangkuan BiDepartment of Urology, The Second Hospital of Anhui Medical University, Hefei, Anhui, China. biliangkuan118@yeah.net.
Anhui Medical University · CNSecond Affiliated Hospital of Anhui Medical University · CNPeking University Shenzhen Hospital · CN

Funding

Anhui Medical University 2021xkj040Anhui Medical University 2022xkj025Anhui Provincial Department of Education YJS20210311Natural Science Foundation of Anhui Province 2108085MH297
6 · The paper itself

Abstract

backgroundRenal cell carcinoma (RCC) is a malignant tumour that may develop in the kidney. RCC is one of the most common kinds of tumours of this sort, and its most common pathological subtype is kidney renal clear cell carcinoma (KIRC). However, the aetiology and pathogenesis of RCC still need to be clarified. Exploring the internal mechanism of RCC contributes to diagnosing and treating this disease. Pyroptosis is a critical process related to cell death. Recent research has shown that pyroptosis is a critical factor in the initiation and progression of tumour formation. Thus far, researchers have progressively uncovered evidence of the regulatory influence that long noncoding RNAs (lncRNAs) have on pyroptosis.

methodsIn this work, a comprehensive bioinformatics approach was used to produce a predictive model according to pyroptosis-interrelated lncRNAs for the purpose of predicting the overall survival and molecular immune specialties of patients diagnosed with KIRC. This model was verified from multiple perspectives.

resultsFirst, we discovered pyroptosis-associated lncRNAs in KIRC patients using the TCGA database and a Sankey diagram. Then, we developed and validated a KIRC patient risk model based on pyroptosis-related lncRNAs. We demonstrated the grouping power of PLnRM through PCA and used PLnRM to assess the tumour immune microenvironment and response to immunotherapy. Immunological and molecular traits of diverse PLnRM subgroups were evaluated, as were clinical KIRC patient characteristics and predictive risk models. On this basis, a predictive nomogram was developed and analyzed, and novel PLnRM candidate compounds were identified. Finally, we investigated possible medications used by KIRC patients.

conclusionsThe results demonstrate that the model generated has significant value for KIRC in clinical practice.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsRNA, Long NoncodingComputational BiologyHumansKidneyPrognosisPyroptosisTumor MicroenvironmentRNA, Long NoncodingComprehensive bioinformaticsImmune responseKidney renal clear cell carcinomaLong noncoding RNAPyroptosis

Identifiers

PMID37700389
PMCPMC10498568
OpenAlexW4386691291

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.