Evidence map›Paper›PMID 37713764›Full record

ArticleMedical image analysis2023

Colonoscopy 3D video dataset with paired depth from 2D-3D registration.

Taylor L Bobrow, Mayank Golhar, Rohan Vijayan, Venkata S Akshintala, Juan R Garcia, Nicholas J Durr

Abstract read
In one paragraph

Article in Medical image analysis, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Self-supervised monocular depth estimation for colonoscopy using normal-guided cross-attention.International journal of computer assisted radiology and surgery · 2026
    Article
  3. Article
  4. Article
  5. Multi-modal monocular endoscopic depth and pose estimation with edge-guided self-supervision.International journal of computer assisted radiology and surgery · 2026
    Article
  6. Article
  7. Digs: diffusion-guided Gaussian Splatting for dynamic occlusion surgical scene reconstruction.International journal of computer assisted radiology and surgery · 2026
    Article
  8. Article
  9. NFL-BA: Near-Field Light Bundle Adjustment for SLAM in Dynamic Lighting.Advances in neural information processing systems · 2025
    Article
  10. SHADeS: self-supervised monocular depth estimation through non-Lambertian image decomposition.International journal of computer assisted radiology and surgery · 2025
    Article
  11. Review
  12. Leveraging Near-Field Lighting for Monocular Depth Estimation from Endoscopy Videos.Computer vision - ECCV ... : ... European Conference on Computer Vision : proceedings. European Conference on Computer Vision · 2025
    Article
  13. Review
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Taylor L BobrowDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Mayank GolharDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Rohan VijayanDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Venkata S AkshintalaDivision of Gastroenterology and Hepatology, Johns Hopkins Medicine, Baltimore, MD 21287, USA.
Juan R GarciaDepartment of Art as Applied to Medicine, Johns Hopkins School of Medicine, Baltimore, MD 21287, USA.
Nicholas J DurrDepartment of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA. Electronic address: ndurr@jhu.edu.

Funding

Quantitative topographic endoscopy for improved screening of non-polypoid colorectal neoplasmsR21EB024700 · NIBIB · JOHNS HOPKINS UNIVERSITY · PI DURR, NICHOLAS JAMES · 2018 to 2019
$623k
NIBIB NIH HHS R21 EB024700
6 · The paper itself

Abstract

Screening colonoscopy is an important clinical application for several 3D computer vision techniques, including depth estimation, surface reconstruction, and missing region detection. However, the development, evaluation, and comparison of these techniques in real colonoscopy videos remain largely qualitative due to the difficulty of acquiring ground truth data. In this work, we present a Colonoscopy 3D Video Dataset (C3VD) acquired with a high definition clinical colonoscope and high-fidelity colon models for benchmarking computer vision methods in colonoscopy. We introduce a novel multimodal 2D-3D registration technique to register optical video sequences with ground truth rendered views of a known 3D model. The different modalities are registered by transforming optical images to depth maps with a Generative Adversarial Network and aligning edge features with an evolutionary optimizer. This registration method achieves an average translation error of 0.321 millimeters and an average rotation error of 0.159 degrees in simulation experiments where error-free ground truth is available. The method also leverages video information, improving registration accuracy by 55.6% for translation and 60.4% for rotation compared to single frame registration. 22 short video sequences were registered to generate 10,015 total frames with paired ground truth depth, surface normals, optical flow, occlusion, six degree-of-freedom pose, coverage maps, and 3D models. The dataset also includes screening videos acquired by a gastroenterologist with paired ground truth pose and 3D surface models. The dataset and registration source code are available at https://durr.jhu.edu/C3VD.

Indexed as

ColonoscopyImaging, Three-DimensionalVideo RecordingAlgorithmsHumans2D-3D registrationColonoscopyGenerative adversarial networkMonocular depth estimationSimultaneous localization and mappingVisual odometry

Identifiers

PMID37713764
PMCPMC10591895

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.