Evidence map›Paper›PMID 37714498›Full record

ArticleBioorganic & medicinal chemistry letters2023

Discovery of a non-covalent ligand for Rpn-13, a therapeutic target for hematological cancers.

Cody A Loy, Christine S Muli, Eslam M H Ali, Dan Xie, Mostafa H Ahmed, Carol Beth Post, Darci J Trader

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Cody A LoyDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, 575 West Stadium Avenue, West Lafayette, IN 47907, United States.
Christine S MuliDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, 575 West Stadium Avenue, West Lafayette, IN 47907, United States.
Eslam M H AliDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, 575 West Stadium Avenue, West Lafayette, IN 47907, United States.
Dan XieDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, 575 West Stadium Avenue, West Lafayette, IN 47907, United States.
Mostafa H AhmedAtomwise Inc., San Francisco, CA, United States.
Carol Beth PostDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, 575 West Stadium Avenue, West Lafayette, IN 47907, United States.
Darci J TraderDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, 575 West Stadium Avenue, West Lafayette, IN 47907, United States. Electronic address: dtrader@purdue.edu.
Purdue University West Lafayette · USHealthwise · US

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI Yoon Yeo · 1985 to 2026
$43.4M
NMR Structure of Peptide and Protein Complexes SupplementR01GM039478 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI POST, CAROL B. · 1997 to 2024
$6.5M
Monitoring and Manipulating the Activity of the Immunoproteasome with Small MoleculesR01AI150847 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TRADER, DARCI J · 2020 to 2023
$1.9M
Investigating the Interaction of a Selective Peptoid Probe and Rpn-13, A Non-Essential Ubiquitin Receptor of the ProteasomeF31CA247327 · NCI · PURDUE UNIVERSITY · PI MULI, CHRISTINE S · 2020 to 2022
$124k
NCI NIH HHS F31 CA247327NCI NIH HHS P30 CA023168NIAID NIH HHS R01 AI150847NIGMS NIH HHS R01 GM039478
6 · The paper itself

Abstract

The ubiquitin-proteasome system serves as the major proteolytic degradation pathway in eukaryotic cells. Many inhibitors that covalently bind to the proteasome's active sites have been developed for hematological cancers, but resistance can arise in patients. To overcome limitations of active-site proteasome inhibitors, we and others have focused on developing ligands that target subunits on the 19S regulatory particle (19S RP). One such 19S RP subunit, Rpn-13, is a ubiquitin receptor required for hematological cancers to rapidly degrade proteins to avoid apoptosis. Reported Rpn-13 inhibitors covalently bind to the Rpn-13's Pru domain and have been effective anti-hematological cancer agents. Here, we describe the discovery of TCL-1, a non-covalent binder to the Pru domain. Optimization of TCL-1's carboxylate group to an ester increases its cytotoxicity in hematological cancer cell lines. Altogether, our data provides a new scaffold for future medicinal chemistry optimization to target Rpn-13 therapeutically.

Indexed as

Antineoplastic AgentsHematologic NeoplasmsProteasome Endopeptidase ComplexHumansLigandsUbiquitin26S proteasome non-ATPase regulatory subunit 13Antineoplastic AgentsLigandsProteasome Endopeptidase ComplexUbiquitinHematological cancerProteasomeRpn-13

Identifiers

PMID37714498
PMCPMC10639113
OpenAlexW4386700965

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.