Evidence map›Paper›PMID 37725636›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Structure of pre-miR-31 reveals an active role in Dicer-TRBP complex processing.

Sicong Ma, Anita Kotar, Ian Hall, Scott Grote, Silvi Rouskin, Sarah C Keane

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The potential role of miR-155 in the tumorigenesis of cervical cancer.Frontiers in cell and developmental biology · 2025
    Review
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Sicong Ma *Biophysics Program, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0002-3587-8249
Anita Kotar *Biophysics Program, University of Michigan, Ann Arbor, MI 48109.
Ian HallDepartment of Chemistry, University of Michigan, Ann Arbor, MI 48109.
Scott GroteDepartment of Microbiology, Harvard Medical School, Boston, MA 02115.
Silvi RouskinDepartment of Microbiology, Harvard Medical School, Boston, MA 02115.
Sarah C KeaneBiophysics Program, University of Michigan, Ann Arbor, MI 48109.ORCID 0000-0003-3206-9048
University of Michigan · USHarvard University · US

Funding

The Biophysics Collaborative Access Team (User Training and Outreach)P30GM138395 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI THOMAS C IRVING · 2021 to 2026
$16.5M
Biophysics of regulatory RNAs and RNPs - Equipment SupplementR35GM138279 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Sarah Courtney Keane · 2020 to 2026
$2.6M
Advanced Pixel Array Detector for Time-Resolved SAXS and Fiber DiffractionS10OD018090 · OD · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2014 to 2014
$529k
NIGMS NIH HHS P30 GM138395NIGMS NIH HHS R35 GM138279NIH HHS S10 OD018090
6 · The paper itself

Abstract

As an essential posttranscriptional regulator of gene expression, microRNA (miRNA) levels must be strictly maintained. The biogenesis of many miRNAs is mediated by trans-acting protein partners through a variety of mechanisms, including remodeling of the RNA structure. miR-31 functions as an oncogene in numerous cancers, and interestingly, its biogenesis is not known to be regulated by protein-binding partners. Therefore, the intrinsic structural properties of the precursor element of miR-31 (pre-miR-31) can provide a mechanism by which its biogenesis is regulated. We determined the solution structure of pre-miR-31 to investigate the role of distinct structural elements in regulating processing by the Dicer-TRBP complex. We found that the presence or absence of mismatches within the helical stem does not strongly influence Dicer-TRBP processing of the pre-miRNAs. However, both the apical loop size and structure at the Dicing site are key elements for discrimination by the Dicer-TRBP complex. Interestingly, our NMR-derived structure reveals the presence of a triplet of base pairs that link the Dicer cleavage site and the apical loop. Mutational analysis in this region suggests that the stability of the junction region strongly influences processing by the Dicer-TRBP complex. Our results enrich our understanding of the active role that RNA structure plays in regulating miRNA biogenesis, which has direct implications for the control of gene expression.

Indexed as

MicroRNAsOncogenesMicroRNAsmicroRNANMR spectroscopyRNAstructural biology

Identifiers

PMID37725636
PMCPMC10523476
OpenAlexW4386859241

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.