Evidence map›Paper›PMID 37726481›Full record

ArticleISME communications2023

Linking bacterial tetrabromopyrrole biosynthesis to coral metamorphosis.

Amanda T Alker, Morgan V Farrell, Alyssa M Demko, Trevor N Purdy, Sanjoy Adak, Bradley S Moore, Jennifer M Sneed, Valerie J Paul, Nicholas J Shikuma

Open access · goldAbstract read
In one paragraph

Article in ISME communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. MyD88 knockdown by RNAi prevents bacterial stimulation of tubeworm metamorphosis.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Amanda T AlkerDepartment of Biology and Viral Information Institute, San Diego State University, San Diego, CA, 92182, USA.
Morgan V FarrellDepartment of Biology and Viral Information Institute, San Diego State University, San Diego, CA, 92182, USA.
Alyssa M DemkoSmithsonian Marine Station, Ft. Pierce, FL, 34949, USA.ORCID http://orcid.org/0000-0002-6690-8172
Trevor N PurdyCenter for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093, USA.
Sanjoy AdakCenter for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093, USA.
Bradley S MooreCenter for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-4652-1253
Jennifer M SneedSmithsonian Marine Station, Ft. Pierce, FL, 34949, USA.
Valerie J PaulSmithsonian Marine Station, Ft. Pierce, FL, 34949, USA.ORCID http://orcid.org/0000-0002-4691-1569
Nicholas J ShikumaDepartment of Biology and Viral Information Institute, San Diego State University, San Diego, CA, 92182, USA. nshikuma@sdsu.edu.ORCID http://orcid.org/0000-0001-5518-5020
San Diego State University · USScripps Institution of Oceanography · USSmithsonian Marine Station · US

Funding

Examining a Unique Contractile Injection System Mediating Host-Microbe InteractionsR35GM146722 · NIGMS · SAN DIEGO STATE UNIVERSITY · PI Nicholas J Shikuma · 2022 to 2026
$1.9M
Natural Sources and Microbial Transformation of Marine Halogenated PollutantsR01ES030316 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ALLEN, ERIC ELLSWORTH, MOORE, BRADLEY S · 2018 to 2022
$669k
NIEHS NIH HHS R01 ES030316NIGMS NIH HHS R35 GM146722
6 · The paper itself

Abstract

An important factor dictating coral fitness is the quality of bacteria associated with corals and coral reefs. One way that bacteria benefit corals is by stimulating the larval to juvenile life cycle transition of settlement and metamorphosis. Tetrabromopyrrole (TBP) is a small molecule produced by bacteria that stimulates metamorphosis with and without attachment in a range of coral species. A standing debate remains, however, about whether TBP biosynthesis from live Pseudoalteromonas bacteria is the primary stimulant of coral metamorphosis. In this study, we create a Pseudoalteromonas sp. PS5 mutant lacking the TBP brominase gene, bmp2. Using this mutant, we confirm that the bmp2 gene is critical for TBP biosynthesis in Pseudoalteromonas sp. PS5. Mutation of this gene ablates the bacterium's ability in live cultures to stimulate the metamorphosis of the stony coral Porites astreoides. We further demonstrate that expression of TBP biosynthesis genes is strongest in stationary and biofilm modes of growth, where Pseudoalteromonas sp. PS5 might exist within surface-attached biofilms on the sea floor. Finally, we create a modular transposon plasmid for genomic integration and fluorescent labeling of Pseudoalteromonas sp. PS5 cells. Our results functionally link a TBP biosynthesis gene from live bacteria to a morphogenic effect in corals. The genetic techniques established here provide new tools to explore coral-bacteria interactions and could help to inform future decisions about utilizing marine bacteria or their products for coral restoration.

Identifiers

PMID37726481
PMCPMC10509201
OpenAlexW4386857446

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.