Evidence map›Paper›PMID 37729018›Full record

ArticleMolecular biology of the cell2023

Exploring the "misfolding problem" by systematic discovery and analysis of functional-but-degraded proteins.

Matthew P Flagg, Breanna Lam, Darren K Lam, Tiffany M Le, Andy Kao, Yousif I Slaiwa, Randolph Y Hampton

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Matthew P FlaggDivision of Biological Sciences, the Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093.
Breanna LamDivision of Biological Sciences, the Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093.
Darren K LamDivision of Biological Sciences, the Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093.
Tiffany M LeDivision of Biological Sciences, the Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093.
Andy KaoDivision of Biological Sciences, the Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093.
Yousif I SlaiwaDivision of Biological Sciences, the Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093.
Randolph Y HamptonDivision of Biological Sciences, the Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093.
University of California San Diego · US

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
GENETIC MECHANISMS AND REGULATIONT32GM007240 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1985 to 2019
$23.8M
PROTEIN DEGRADATION AND CHOLESTEROL REGULATIONR01DK051996 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1997 to 2024
$5.2M
NHGRI NIH HHS T32 HG000044NIDDK NIH HHS R01 DK051996NIGMS NIH HHS T32 GM007240
6 · The paper itself

Abstract

In both health and disease, the ubiquitin-proteasome system (UPS) degrades point mutants that retain partial function but have decreased stability compared with their wild-type counterparts. This class of UPS substrate includes routine translational errors and numerous human disease alleles, such as the most common cause of cystic fibrosis, ΔF508-CFTR. Yet, there is no systematic way to discover novel examples of these "minimally misfolded" substrates. To address that shortcoming, we designed a genetic screen to isolate functional-but-degraded point mutants, and we used the screen to study soluble, monomeric proteins with known structures. These simple parent proteins yielded diverse substrates, allowing us to investigate the structural features, cytotoxicity, and small-molecule regulation of minimal misfolding. Our screen can support numerous lines of inquiry, and it provides broad access to a class of poorly understood but biomedically critical quality-control substrates.

Indexed as

Cystic FibrosisCystic Fibrosis Transmembrane Conductance RegulatorHumansMutationProteasome Endopeptidase ComplexProtein Processing, Post-TranslationalUbiquitinCystic Fibrosis Transmembrane Conductance RegulatorProteasome Endopeptidase ComplexUbiquitin

Identifiers

PMID37729018
PMCPMC10848938
OpenAlexW4386886999

What Socratic holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.