Evidence map›Paper›PMID 37731986›Full record

ReviewFrontiers in plant science2023

Available cloned genes and markers for genetic improvement of biotic stress resistance in rice.

Eliza Vie Simon, Sherry Lou Hechanova, Jose E Hernandez, Charng-Pei Li, Adnan Tülek, Eok-Keun Ahn, Jirapong Jairin, Il-Ryong Choi, Raman M Sundaram, Kshirod K Jena and 1 more

Abstract readReview
In one paragraph

Review in Frontiers in plant science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. CRISPR/Cas9-Mediated Editing ofPlants (Basel, Switzerland) · 2026
    Article
  3. Cloning ofPlants (Basel, Switzerland) · 2026
    Article
  4. An Auto-Activated NLR-Protein OsRGA3Plant biotechnology journal · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Breaking genetic linkage barriers to improve brown planthopper resistance and grain yield in japonica rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  9. Article
  10. Article
  11. Review
  12. Map-Based Cloning and Characterization of a Major QTL Gene,International journal of molecular sciences · 2024
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Eliza Vie SimonRice Breeding Innovation Department, International Rice Research Institute (IRRI), Laguna, Philippines.
Sherry Lou HechanovaRice Breeding Innovation Department, International Rice Research Institute (IRRI), Laguna, Philippines.
Jose E HernandezInstitute of Crop Science (ICropS), University of the Philippines Los Baños, Laguna, Philippines.
Charng-Pei LiTaiwan Agricultural Research Institute (TARI), Council of Agriculture, Taiwan.
Adnan TülekTrakya Agricultural Research Institute, Edirne, Türkiye.
Eok-Keun AhnNational Institute of Crop Science, Rural Development Administration (RDA), Republic of Korea.
Jirapong JairinDivision of Rice Research and Development, Rice Department, Bangkok, Thailand.
Il-Ryong ChoiRice Breeding Innovation Department, International Rice Research Institute (IRRI), Laguna, Philippines.
Raman M SundaramICAR-Indian Institute of Rice Research, Rajendranagar, Hyderabad, India.
Kshirod K JenaSchool of Biotechnology, KIIT Deemed University, Bhubaneswar, Odisha, India.
Sung-Ryul KimRice Breeding Innovation Department, International Rice Research Institute (IRRI), Laguna, Philippines.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biotic stress is one of the major threats to stable rice production. Climate change affects the shifting of pest outbreaks in time and space. Genetic improvement of biotic stress resistance in rice is a cost-effective and environment-friendly way to control diseases and pests compared to other methods such as chemical spraying. Fast deployment of the available and suitable genes/alleles in local elite varieties through marker-assisted selection (MAS) is crucial for stable high-yield rice production. In this review, we focused on consolidating all the available cloned genes/alleles conferring resistance against rice pathogens (virus, bacteria, and fungus) and insect pests, the corresponding donor materials, and the DNA markers linked to the identified genes. To date, 48 genes (independent loci) have been cloned for only major biotic stresses: seven genes for brown planthopper (BPH), 23 for blast, 13 for bacterial blight, and five for viruses. Physical locations of the 48 genes were graphically mapped on the 12 rice chromosomes so that breeders can easily find the locations of the target genes and distances among all the biotic stress resistance genes and any other target trait genes. For efficient use of the cloned genes, we collected all the publically available DNA markers (~500 markers) linked to the identified genes. In case of no available cloned genes yet for the other biotic stresses, we provided brief information such as donor germplasm, quantitative trait loci (QTLs), and the related papers. All the information described in this review can contribute to the fast genetic improvement of biotic stress resistance in rice for stable high-yield rice production.

Indexed as

bacterial blightbiotic stressblastbrown planthoppermarkermarker-assisted selectionrice

Identifiers

PMID37731986
PMCPMC10507716

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.