Evidence map›Paper›PMID 37733741›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Inducible CRISPR-targeted "knockdown" of human gut

Zachary W Beller, Darryl A Wesener, Timothy R Seebeck, Janaki L Guruge, Alexandra E Byrne, Suzanne Henrissat, Nicolas Terrapon, Bernard Henrissat, Dmitry A Rodionov, Andrei L Osterman and 10 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Review
  3. Lessons from the model gut BacteroidalesJournal of bacteriology · 2025
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Inducible CRISPR-targeted "knockdown" of human gutProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 5 countries.

Zachary W BellerEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.ORCID 0000-0003-3965-9147
Darryl A WesenerEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.
Timothy R SeebeckEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.
Janaki L GurugeEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.
Alexandra E ByrneEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.
Suzanne HenrissatEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.
Nicolas TerraponArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique and Aix-Marseille University, 13288 Marseille, France.
Bernard HenrissatDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Kgs. Lyngby DK-2800, Denmark.
Dmitry A RodionovInfectious and Inflammatory Disease Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037.
Andrei L OstermanInfectious and Inflammatory Disease Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037.
Chris SuarezDepartment of Chemistry, University of California, Davis, CA 95616.
Nikita P BacalzoDepartment of Chemistry, University of California, Davis, CA 95616.
Ye ChenDepartment of Chemistry, University of California, Davis, CA 95616.
Garret CoutureDepartment of Chemistry, University of California, Davis, CA 95616.
Carlito B LebrillaDepartment of Chemistry, University of California, Davis, CA 95616.ORCID 0000-0001-7190-5323
Zhigang ZhangGenome Engineering R&D, MilliporeSigma, the Life Science business Merck KGaA, Darmstadt, Germany, St. Louis, MO 63103.
Erik R EastlundGenome Engineering R&D, MilliporeSigma, the Life Science business Merck KGaA, Darmstadt, Germany, St. Louis, MO 63103.
Caitlin H McCannGenome Engineering R&D, MilliporeSigma, the Life Science business Merck KGaA, Darmstadt, Germany, St. Louis, MO 63103.
Gregory D DavisGenome Engineering R&D, MilliporeSigma, the Life Science business Merck KGaA, Darmstadt, Germany, St. Louis, MO 63103.
Jeffrey I GordonEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.
Washington University in St. Louis · USMerck (Germany) · DEUniversity of California, Davis · USSanford Burnham Prebys Medical Discovery Institute · USAix-Marseille Université · FRKing Abdulaziz University · SA

Funding

NATIONAL RESEARCH SERVICE AWARD-MEDICAL SCIENTISTT32GM007200 · NIGMS · WASHINGTON UNIVERSITY · PI YOKOYAMA, WAYNE M. · 1985 to 2024
$59.8M
WU P&FP30DK020579 · NIDDK · WASHINGTON UNIVERSITY · PI James Alexander Fitzpatrick · 2013 to 2026
$27.1M
GUT MICROBIOTA AND OBESITY: STUDIES IN GNOTOBIOTIC MICER01DK070977 · NIDDK · WASHINGTON UNIVERSITY · PI GORDON, JEFFREY I, HETTICH, ROBERT L. · 2005 to 2020
$6.3M
A Biomedical Mass Spectrometry Resource: Ongoing Driving Biomedical ProjectsR24GM136766 · NIGMS · WASHINGTON UNIVERSITY · PI GROSS, MICHAEL L · 2020 to 2022
$2.3M
Human gut bacterial cell surface polysaccharides as a microbial nutrient source and target of immunoregulatory proteins shape gut microbiota structure and functionR00AT011374 · NCCIH · OHIO STATE UNIVERSITY · PI WESENER, DARRYL A · 2023 to 2025
$707k
The role and fate of Mtb storage lipids LCTAG and MWER21AI144658 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI PURDY, GEORGIANA E. · 2020 to 2021
$438k
Human gut bacterial cell surface polysaccharides as a microbial nutrient source and target of immunoregulatory proteins shape gut microbiota structure and functionK99AT011374 · NCCIH · WASHINGTON UNIVERSITY · PI WESENER, DARRYL A · 2021 to 2022
$217k
Impact of Gut Bacterial Interactions on the Response to Fiber-Based PrebioticsF30DK123838 · NIDDK · WASHINGTON UNIVERSITY · PI BELLER, ZACHARY WALTER · 2020 to 2022
$127k
NCCIH NIH HHS K99 AT011374NCCIH NIH HHS R00 AT011374NIAID NIH HHS R21 AI144658NIDDK NIH HHS F30 DK123838NIDDK NIH HHS P30 DK020579NIDDK NIH HHS R01 DK070977NIGMS NIH HHS R24 GM136766NIGMS NIH HHS T32 GM007200
6 · The paper itself

Abstract

Understanding how members of the human gut microbiota prioritize nutrient resources is one component of a larger effort to decipher the mechanisms defining microbial community robustness and resiliency in health and disease. This knowledge is foundational for development of microbiota-directed therapeutics. To model how bacteria prioritize glycans in the gut, germfree mice were colonized with 13 human gut bacterial strains, including seven saccharolytic

Indexed as

BacteroidesBacteroides thetaiotaomicronAnimalsBiological AssayDiet, WesternHumansMicePolysaccharidesPolysaccharidescommunity ecology/interbacterial interactionsCRISPR mutagenesisgnotobiotic micehuman gut microbiomepolysaccharide utilization

Identifiers

PMID37733741
PMCPMC10523453
OpenAlexW4386918096

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.