Evidence map›Paper›PMID 37735176›Full record

ArticleNature communications2023

Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development.

Vivekanandan Ramalingam, Xinyang Yu, Brian D Slaughter, Jay R Unruh, Kaelan J Brennan, Anastasiia Onyshchenko, Jeffrey J Lange, Malini Natarajan, Michael Buck, Julia Zeitlinger

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Vivekanandan RamalingamStowers Institute for Medical Research, Kansas City, MO, USA.ORCID http://orcid.org/0000-0002-3631-8913
Xinyang YuDepartment of Biochemistry, State University of New York at Buffalo, Buffalo, NY, USA.
Brian D SlaughterStowers Institute for Medical Research, Kansas City, MO, USA.ORCID http://orcid.org/0000-0001-8305-8395
Jay R UnruhStowers Institute for Medical Research, Kansas City, MO, USA.ORCID http://orcid.org/0000-0003-3077-4990
Kaelan J BrennanStowers Institute for Medical Research, Kansas City, MO, USA.
Anastasiia OnyshchenkoStowers Institute for Medical Research, Kansas City, MO, USA.
Jeffrey J LangeStowers Institute for Medical Research, Kansas City, MO, USA.
Malini NatarajanStowers Institute for Medical Research, Kansas City, MO, USA.
Michael BuckDepartment of Biochemistry, State University of New York at Buffalo, Buffalo, NY, USA.ORCID http://orcid.org/0000-0001-5320-3678
Julia ZeitlingerStowers Institute for Medical Research, Kansas City, MO, USA. jbz@stowers.org.ORCID http://orcid.org/0000-0002-5172-3335
Stowers Institute for Medical Research · USJacobs Institute · USUniversity at Buffalo, State University of New York · US

Funding

Investigating Developmental Potential Based on Genome-wide Chromatin StatusDP2OD004561 · OD · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI ZEITLINGER, JULIA · 2008 to 2008
$2.4M
A high-throughput, comprehensive, and quantitative approach for measuring nucleosome-protein bindingR01GM132199 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI BUCK, MICHAEL JOSEPH · 2019 to 2022
$1.4M
NIGMS NIH HHS R01 GM132199NIH HHS DP2 OD004561
6 · The paper itself

Abstract

While the accessibility of enhancers is dynamically regulated during development, promoters tend to be constitutively accessible and poised for activation by paused Pol II. By studying Lola-I, a Drosophila zinc finger transcription factor, we show here that the promoter state can also be subject to developmental regulation independently of gene activation. Lola-I is ubiquitously expressed at the end of embryogenesis and causes its target promoters to become accessible and acquire paused Pol II throughout the embryo. This promoter transition is required but not sufficient for tissue-specific target gene activation. Lola-I mediates this function by depleting promoter nucleosomes, similar to the action of pioneer factors at enhancers. These results uncover a level of regulation for promoters that is normally found at enhancers and reveal a mechanism for the de novo establishment of paused Pol II at promoters.

Indexed as

DrosophilaEmbryo, MammalianAnimalsEmbryonic DevelopmentNucleosomesPromoter Regions, GeneticRNA Polymerase IINucleosomesRNA Polymerase II

Identifiers

PMID37735176
PMCPMC10514308
OpenAlexW4386929306

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.