Evidence map›Paper›PMID 37746130›Full record

ReviewFrontiers in fungal biology2023

The Sordariomycetes: an expanding resource with Big Data for mining in evolutionary genomics and transcriptomics.

Zheng Wang, Wonyong Kim, Yen-Wen Wang, Elizabeta Yakubovich, Caihong Dong, Frances Trail, Jeffrey P Townsend, Oded Yarden

Erratum issuedAbstract readReview
In one paragraph

Review in Frontiers in fungal biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Two new species ofMycoKeys · 2026
    Article
  2. Article
  3. First genome report ofFrontiers in fungal biology · 2026
    Article
  4. Endophytic Species of the GenusMicroorganisms · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. The complete mitochondrial genome of the rice blast fungusMitochondrial DNA. Part B, Resources · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Zheng WangDepartment of Biostatistics, Yale School of Public Health, New Haven, CT, United States.
Wonyong KimKorean Lichen Research Institute, Sunchon National University, Suncheon, Republic of Korea.
Yen-Wen WangDepartment of Biostatistics, Yale School of Public Health, New Haven, CT, United States.
Elizabeta YakubovichDepartment of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel.
Caihong DongInstitute of Microbiology, Chinese Academy of Sciences, Beijing, China.
Frances TrailDepartment of Plant Biology, Michigan State University, East Lansing, MI, United States.
Jeffrey P TownsendDepartment of Biostatistics, Yale School of Public Health, New Haven, CT, United States.
Oded YardenDepartment of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel.

Funding

Evolutionary multispecies transcriptomics to reveal genes that govern fungal spore germination and pathogenesisR01AI146584 · NIAID · YALE UNIVERSITY · PI SIL, ANITA, TOWNSEND, JEFFREY PETER · 2019 to 2023
$3.9M
NIAID NIH HHS R01 AI146584
6 · The paper itself

Abstract

Advances in genomics and transcriptomics accompanying the rapid accumulation of omics data have provided new tools that have transformed and expanded the traditional concepts of model fungi. Evolutionary genomics and transcriptomics have flourished with the use of classical and newer fungal models that facilitate the study of diverse topics encompassing fungal biology and development. Technological advances have also created the opportunity to obtain and mine large datasets. One such continuously growing dataset is that of the Sordariomycetes, which exhibit a richness of species, ecological diversity, economic importance, and a profound research history on amenable models. Currently, 3,574 species of this class have been sequenced, comprising nearly one-third of the available ascomycete genomes. Among these genomes, multiple representatives of the model genera

Indexed as

Big DataevolutionFusariumgenomicsNeurosporaSordariomycetestranscriptomicsTrichoderma

Identifiers

PMID37746130
PMCPMC10512317

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.