Evidence map›Paper›PMID 37759072›Full record

ArticleScientific reports2023

Physicochemical properties of the vacuolar membrane and cellular factors determine formation of vacuolar invaginations.

Yoko Kimura, Takuma Tsuji, Yosuke Shimizu, Yuki Watanabe, Masafumi Kimura, Toyoshi Fujimoto, Miyuki Higuchi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yoko KimuraGraduate School of Integrated Science and Technology, Shizuoka University, Shizuoka, 422-8529, Japan. kimura.yoko@shizuoka.ac.jp.
Takuma TsujiLaboratory of Molecular Cell Biology, Research Institute for Diseases of Old Age, Juntendo University Graduate School of Medicine, Tokyo, Japan.
Yosuke ShimizuGraduate School of Integrated Science and Technology, Shizuoka University, Shizuoka, 422-8529, Japan.
Yuki WatanabeGraduate School of Integrated Science and Technology, Shizuoka University, Shizuoka, 422-8529, Japan.
Masafumi KimuraGraduate School of Integrated Science and Technology, Shizuoka University, Shizuoka, 422-8529, Japan.
Toyoshi FujimotoLaboratory of Molecular Cell Biology, Research Institute for Diseases of Old Age, Juntendo University Graduate School of Medicine, Tokyo, Japan.
Miyuki HiguchiDepartment of Agriculture, Shizuoka University, Shizuoka, 422-8529, Japan.
Shizuoka University · JPJuntendo University · JPUniversity of Shizuoka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vacuoles change their morphology in response to stress. In yeast exposed to chronically high temperatures, vacuolar membranes get deformed and invaginations are formed. We show that phase-separation of vacuolar membrane occurred after heat stress leading to the formation of the invagination. In addition, Hfl1, a vacuolar membrane-localized Atg8-binding protein, was found to suppress the excess vacuolar invaginations after heat stress. At that time, Hfl1 formed foci at the neck of the invaginations in wild-type cells, whereas it was efficiently degraded in the vacuole in the atg8Δ mutant. Genetic analysis showed that the endosomal sorting complex required for transport machinery was necessary to form the invaginations irrespective of Atg8 or Hfl1. In contrast, a combined mutation with the vacuole BAR domain protein Ivy1 led to vacuoles in hfl1Δivy1Δ and atg8Δivy1Δ mutants having constitutively invaginated structures; moreover, these mutants showed stress-sensitive phenotypes. Our findings suggest that vacuolar invaginations result from the combination of changes in the physiochemical properties of the vacuolar membrane and other cellular factors.

Indexed as

EndosomesVacuolesAutophagy-Related Protein 8 FamilyCell MovementMutationSaccharomyces cerevisiaeAutophagy-Related Protein 8 Family

Identifiers

PMID37759072
PMCPMC10533490
OpenAlexW4387099709

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.