Evidence map›Paper›PMID 37770578›Full record

ArticleMolecular psychiatry2023

Psychiatric risk gene Transcription Factor 4 (TCF4) regulates the density and connectivity of distinct inhibitory interneuron subtypes.

Huei-Ying Chen, BaDoi N Phan, Gina Shim, Gregory R Hamersky, Norah Sadowski, Thomas S O'Donnell, Srinidhi Rao Sripathy, Joseph F Bohlen, Andreas R Pfenning, Brady J Maher

Open access · greenAbstract read
In one paragraph

Article in Molecular psychiatry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Huei-Ying ChenLieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.
BaDoi N PhanComputational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.ORCID 0000-0001-6331-5980
Gina ShimLieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.ORCID 0000-0002-8507-5540
Gregory R HamerskyLieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.
Norah SadowskiLieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.ORCID 0000-0002-2982-3161
Thomas S O'DonnellLieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.
Srinidhi Rao SripathyLieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.ORCID 0000-0002-6236-6396
Joseph F BohlenLieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA.
Andreas R PfenningNeuroscience Institute, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.ORCID 0000-0002-3447-9801
Brady J MaherLieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD, 21205, USA. brady.maher@libd.org.ORCID 0000-0001-5930-885X
Lieber Institute for Brain Development · USJohns Hopkins University · USUniversity of Pittsburgh · US

Funding

Cellular and Molecular Analysis of the Schizophrenia and Autism Spectrum Disorder gene Transcription Factor 4 (TCF4)R01MH110487 · NIMH · LIEBER INSTITUTE, INC. · PI MAHER, BRADY J · 2016 to 2024
$5.2M
Functional analysis of the Schizophrenia and Autism Spectrum Disorder gene TCF4 iR56MH104593 · NIMH · LIEBER INSTITUTE, INC. · PI MAHER, BRADY J · 2014 to 2015
$915k
NIMH NIH HHS R01 MH110487NIMH NIH HHS R56 MH104593
6 · The paper itself

Abstract

Transcription factor 4 (TCF4) is a basic helix-loop-helix transcription factor that is implicated in a variety of psychiatric disorders including autism spectrum disorder (ASD), major depression, and schizophrenia. Autosomal dominant mutations in TCF4 are causal for a specific ASD called Pitt-Hopkins Syndrome (PTHS). However, our understanding of etiological and pathophysiological mechanisms downstream of TCF4 mutations is incomplete. Single cell sequencing indicates TCF4 is highly expressed in GABAergic interneurons (INs). Here, we performed cell-type specific expression analysis (CSEA) and cellular deconvolution (CD) on bulk RNA sequencing data from 5 different PTHS mouse models. Using CSEA we observed differentially expressed genes (DEGs) were enriched in parvalbumin expressing (PV+) INs and CD predicted a reduction in the PV+ INs population. Therefore, we investigated the role of TCF4 in regulating the development and function of INs in the Tcf4

Indexed as

Autism Spectrum DisorderAnimalsCerebral CortexInterneuronsMiceMutationTranscription Factor 4Tcf4 protein, mouseTranscription Factor 4

Identifiers

PMID37770578
PMCPMC11144438
OpenAlexW4387117854

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.