Evidence map›Paper›PMID 37772400›Full record

ArticleCirculation2023

An Anterior Second Heart Field Enhancer Regulates the Gene Regulatory Network of the Cardiac Outflow Tract.

Naoko Yamaguchi, Ernest W Chang, Ziyan Lin, Akshay Shekhar, Lei Bu, Alireza Khodadadi-Jamayran, Aristotelis Tsirigos, Yiyun Cen, Colin K L Phoon, Ivan P Moskowitz and 1 more

Open access · greenAbstract read
In one paragraph

Article in Circulation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 17 citations in OpenAlex.

  1. An Outflow Tract Myocardium-Specific Enhancer at the Sema3c Locus During Heart Development.Genes to cells : devoted to molecular & cellular mechanisms · 2026
    Article
  2. Review
  3. Role of eRNAs in Cardiovascular Diseases.Current cardiology reviews · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Genetic and Environmental Contributors To Congenital Heart Disease.Current treatment options in cardiovascular medicine · 2025
    Review
  13. Phenomics (Cham, Switzerland) · 2024
    Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Naoko Yamaguchi *The Leon H. Charney Division of Cardiology (N.Y., E.W.C., L.B., Y.C., D.S.P.), New York University Grossman School of Medicine, NY.ORCID 0000-0002-6042-3529
Ernest W Chang *The Leon H. Charney Division of Cardiology (N.Y., E.W.C., L.B., Y.C., D.S.P.), New York University Grossman School of Medicine, NY.ORCID 0000-0002-1378-2967
Ziyan LinNYU Applied Bioinformatics Labs (Z.L., A.K.J., A.T.), New York University Grossman School of Medicine, NY.ORCID 0000-0002-4170-7278
Akshay ShekharRegeneron Pharmaceuticals, Inc. Biotechnology, Tarrytown, NY (A.S.).ORCID 0000-0002-9168-9987
Lei BuThe Leon H. Charney Division of Cardiology (N.Y., E.W.C., L.B., Y.C., D.S.P.), New York University Grossman School of Medicine, NY.
Alireza Khodadadi-JamayranNYU Applied Bioinformatics Labs (Z.L., A.K.J., A.T.), New York University Grossman School of Medicine, NY.ORCID 0000-0003-2495-7504
Aristotelis TsirigosNYU Applied Bioinformatics Labs (Z.L., A.K.J., A.T.), New York University Grossman School of Medicine, NY.ORCID 0000-0002-7512-8477
Yiyun CenThe Leon H. Charney Division of Cardiology (N.Y., E.W.C., L.B., Y.C., D.S.P.), New York University Grossman School of Medicine, NY.
Colin K L PhoonDivision of Pediatric Cardiology, Hassenfeld Children's Hospital at NYU Langone, New York University Grossman School of Medicine, Fink Children's Center, NY (C.K.L.P.).
Ivan P MoskowitzDepartment of Pediatrics, Pathology, and Human Genetics, The University of Chicago, IL (I.P.M.).ORCID 0000-0003-0014-4963
David S ParkThe Leon H. Charney Division of Cardiology (N.Y., E.W.C., L.B., Y.C., D.S.P.), New York University Grossman School of Medicine, NY.ORCID 0000-0001-5858-5353
New York University · USRegeneron (United States) · USUniversity of Chicago · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MARK Reid PHILIPS · 1985 to 2026
$83.1M
TR&D 4: Revealing Microstructure: Biophysical modeling and validation for discovery and clinical careP41EB017183 · NIBIB · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Daniel K Sodickson · 2014 to 2026
$19.3M
Training Program in Cardiovascular SciencesT32HL098129 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Glenn I Fishman, Ira J Goldberg · 2009 to 2026
$5.9M
Etv1 is an Essential Regulator of Fast Conduction Tissues in the HeartR01HL132073 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PARK, DAVID S · 2017 to 2021
$2.1M
The Role of ERBB4 in Atrial Electrophysiology and Atrial FibrillationR01HL165130 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PARK, DAVID S · 2022 to 2025
$1.7M
Inverted two photon laser scanning microscope for host defenseS10RR023704 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DUSTIN, MICHAEL LORAN · 2008 to 2008
$500k
NCI NIH HHS P30 CA016087NCRR NIH HHS S10 RR023704NHLBI NIH HHS R01 HL132073NHLBI NIH HHS R01 HL165130NHLBI NIH HHS T32 HL098129NIBIB NIH HHS P41 EB017183
6 · The paper itself

Abstract

backgroundConotruncal defects due to developmental abnormalities of the outflow tract (OFT) are an important cause of cyanotic congenital heart disease. Dysregulation of transcriptional programs tuned by NKX2-5 (NK2 homeobox 5), GATA6 (GATA binding protein 6), and TBX1 (T-box transcription factor 1) have been implicated in abnormal OFT morphogenesis. However, there remains no consensus on how these transcriptional programs function in a unified gene regulatory network within the OFT.

methodsWe generated mice harboring a 226-nucleotide deletion of a highly conserved cardiac enhancer containing 2 GATA-binding sites located ≈9.4 kb upstream of the transcription start site of

results

conclusionsOur results using human and mouse models reveal an essential gene regulatory network of the OFT that requires an anterior second heart field enhancer to link GATA6 with NKX2-5-dependent rotation and septation gene programs.

Indexed as

Induced Pluripotent Stem CellsTranscription FactorsAnimalsGene Expression Regulation, DevelopmentalGene Regulatory NetworksHeartHomeobox Protein Nkx-2.5Homeodomain ProteinsHumansMiceMice, TransgenicMyocytes, CardiacHomeobox Protein Nkx-2.5Homeodomain ProteinsTranscription Factorsbundle-branch blockconotruncal cardiac defectsenhancer elements, geneticgene regulatory networksheart defects, congenitaltranscription factors

Identifiers

PMID37772400
PMCPMC10905423
OpenAlexW4387157220

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.