Evidence map›Paper›PMID 37794352›Full record

ArticleBMC plant biology2023

Omics analyses of Rehmannia glutinosa dedifferentiated and cambial meristematic cells reveal mechanisms of catalpol and indole alkaloid biosynthesis.

Pengfei Zhou, Haihua Li, Yujin Lin, Yujun Zhou, Yinzi Chen, Yiheng Li, Xuan Li, Hui Yan, Weiming Lin, Beilu Xu and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Pengfei ZhouSchool of Basic Medical Science, Guangdong Medical University, Dongguan, 523808, China. zpf861223@gdmu.edu.cn.
Haihua LiSchool of Medicine and Health, Guangdong Innovative Technical College, Dongguan, 523946, China.
Yujin LinSchool of Pharmacy, Guangdong Medical University, Dongguan, 523808, China.
Yujun ZhouSchool of Pharmacy, Guangdong Medical University, Dongguan, 523808, China.
Yinzi ChenSchool of Pharmacy, Guangdong Medical University, Dongguan, 523808, China.
Yiheng LiSchool of Pharmacy, Guangdong Medical University, Dongguan, 523808, China.
Xuan LiSchool of Pharmacy, Guangdong Medical University, Dongguan, 523808, China.
Hui YanSchool of Pharmacy, Guangdong Medical University, Dongguan, 523808, China.
Weiming LinSchool of Pharmacy, Guangdong Medical University, Dongguan, 523808, China.
Beilu XuSchool of Pharmacy, Guangdong Medical University, Dongguan, 523808, China.
Huiting DengSchool of Pharmacy, Guangdong Medical University, Dongguan, 523808, China.
Xiaoqi QiuSchool of Pharmacy, Guangdong Medical University, Dongguan, 523808, China.
Guangdong Medical College · CNGuangdong Industry Technical College · CN

Funding

College Student Innovation and entrepreneurship training program No. S202110571052, S202110571107, S202210571053, GDMU2020125, GDMU2021157 and ZCDM003Funds for PHD researchers of Guangdong Medical University in 2019 No. B2019002GuangDong Basic and Applied Basic Research Foundation No. 2019A1515111084 and No. 2021A1515012583Medical Scientific Research Foundation of Guangdong Province of China No. A2021097Science and Technology Development Special Fund Competitive Allocation Project of Zhanjiang City No. 2020A01038Science and Technology Planning Project of Zhanjiang No. 2020B01057Science Project of Traditional Chinese Medicine Bureau of Guangdong Province of China No. 20212099
6 · The paper itself

Abstract

backgroundRehmannia glutinosa is a rich source of terpenoids with a high medicinal reputation. The present study compared dedifferentiated cells (DDCs) and cambial meristematic cells (CMCs) cell cultures of R. glutinosa for terpenoid (catalpol) and indole alkaloid (IA) biosynthesis. In this regard, we used widely targeted metabolomics and transcriptome sequencing approaches together with the comparison of cell morphology, cell death (%), and catalpol production at different time points.

resultsWe were able to identify CMCs based on their morphology and hypersensitivity to zeocin. CMCs showed higher dry weight content and better catalpol production compared to DDCs. The metabolome analysis revealed higher concentrations of IA, terpenoids, and catalpol in CMCs compared to DDCs. The transcriptome sequencing analysis showed that a total of 27,201 genes enriched in 139 pathways were differentially expressed. The higher catalpol concentration in CMCs is related to the expression changes in genes involved in acetyl-CoA and geranyl-PP biosynthesis, which are precursors for monoterpenoid biosynthesis. Moreover, the expressions of the four primary genes involved in monoterpenoid biosynthesis (NMD, CYP76A26, UGT6, and CYP76F14), along with a squalene monooxygenase, exhibit a strong association with the distinct catalpol biosynthesis. Contrarily, expression changes in AADC, STR, and RBG genes were consistent with the IA biosynthesis. Finally, we discussed the phytohormone signaling and transcription factors in relation to observed changes in metabolome.

conclusionsOverall, our study provides novel data for improving the catalpol and IA biosynthesis in R. glutinosa.

Indexed as

RehmanniaIndole AlkaloidsIridoid GlucosidesMeristemcatalpolIndole AlkaloidsIridoid GlucosidesCambial meristematic cellsCatalpolCell suspension culturesIridoidsMetabolomePhenylalaninePlant-hormone signal transductionTranscriptomeTryptophan

Identifiers

PMID37794352
PMCPMC10552359
OpenAlexW4387357412

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.