Evidence map›Paper›PMID 37813838›Full record

ArticleNature communications2023

A cyclin-dependent kinase-mediated phosphorylation switch of disordered protein condensation.

Juan Manuel Valverde, Geronimo Dubra, Michael Phillips, Austin Haider, Carlos Elena-Real, Aurélie Fournet, Emile Alghoul, Dhanvantri Chahar, Nuria Andrés-Sanchez, Matteo Paloni and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Decoding Cdk1 control: from mitotic thresholds to meiotic specificity.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 3 countries.

Juan Manuel Valverde *Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Utrecht, 3584 CH, Utrecht, Netherlands.ORCID 0000-0002-0310-5751
Geronimo Dubra *IGMM, CNRS, University of Montpellier, INSERM, Montpellier, France.ORCID 0000-0002-9486-3274
Michael PhillipsDepartment of Physics and Astronomy, University of Denver, Denver, Co, 80208, USA.ORCID 0000-0003-0587-6880
Austin HaiderDepartment of Molecular and Cellular Biophysics, University of Denver, 80208, Denver, Co, USA.
Carlos Elena-RealCBS, CNRS, University of Montpellier, INSERM, Montpellier, France.
Aurélie FournetCBS, CNRS, University of Montpellier, INSERM, Montpellier, France.
Emile AlghoulIGH, CNRS, University of Montpellier, Montpellier, France.ORCID 0000-0002-6722-5146
Dhanvantri ChaharIGMM, CNRS, University of Montpellier, INSERM, Montpellier, France.
Nuria Andrés-SanchezIGMM, CNRS, University of Montpellier, INSERM, Montpellier, France.
Matteo PaloniDepartment of Physics and Astronomy, University of Denver, Denver, Co, 80208, USA.ORCID 0000-0003-4841-9321
Pau BernadóCBS, CNRS, University of Montpellier, INSERM, Montpellier, France.ORCID 0000-0001-7395-5922
Guido van MierloDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, 6525 GA, The Netherlands.ORCID 0000-0001-5883-0339
Michiel VermeulenDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, 6525 GA, The Netherlands.ORCID 0000-0003-0836-6894
Henk van den ToornBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Utrecht, 3584 CH, Utrecht, Netherlands.ORCID 0000-0002-0270-5763
Albert J R HeckBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Utrecht, 3584 CH, Utrecht, Netherlands.ORCID 0000-0002-2405-4404
Angelos ConstantinouIGH, CNRS, University of Montpellier, Montpellier, France.ORCID 0000-0002-2994-8140
Alessandro BarducciCBS, CNRS, University of Montpellier, INSERM, Montpellier, France.ORCID 0000-0002-1911-8039
Kingshuk GhoshDepartment of Physics and Astronomy, University of Denver, Denver, Co, 80208, USA.
Nathalie SibilleCBS, CNRS, University of Montpellier, INSERM, Montpellier, France.ORCID 0000-0001-8145-6795
Puck KnipscheerOncode Institute, Hubrecht Institute-KNAW and University Medical Center, Utrecht, 3584 CT, Netherlands.ORCID 0000-0003-4198-0132
Liliana KrasinskaIGMM, CNRS, University of Montpellier, INSERM, Montpellier, France.ORCID 0000-0002-6858-0852
Daniel FisherIGMM, CNRS, University of Montpellier, INSERM, Montpellier, France. daniel.fisher@igmm.cnrs.fr.ORCID 0000-0002-0822-3482
Maarten AltelaarBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Utrecht, 3584 CH, Utrecht, Netherlands. m.altelaar@uu.nl.ORCID 0000-0001-5093-5945
Centre National de la Recherche Scientifique · FRUniversity of Denver · USUtrecht University · NLRadboud University Nijmegen · NLUniversity Medical Center Utrecht · NL

Funding

Modeling Conformational Ensembles of the Disordered ProteinsR01GM138901 · NIGMS · UNIVERSITY OF DENVER (COLORADO SEMINARY) · PI GHOSH, KINGSHUK · 2020 to 2024
$1.3M
NIGMS NIH HHS R01 GM138901
6 · The paper itself

Abstract

Cell cycle transitions result from global changes in protein phosphorylation states triggered by cyclin-dependent kinases (CDKs). To understand how this complexity produces an ordered and rapid cellular reorganisation, we generated a high-resolution map of changing phosphosites throughout unperturbed early cell cycles in single Xenopus embryos, derived the emergent principles through systems biology analysis, and tested them by biophysical modelling and biochemical experiments. We found that most dynamic phosphosites share two key characteristics: they occur on highly disordered proteins that localise to membraneless organelles, and are CDK targets. Furthermore, CDK-mediated multisite phosphorylation can switch homotypic interactions of such proteins between favourable and inhibitory modes for biomolecular condensate formation. These results provide insight into the molecular mechanisms and kinetics of mitotic cellular reorganisation.

Indexed as

Cell Cycle ProteinsCyclin-Dependent KinasesCell CycleCyclin-Dependent Kinase 2PhosphorylationCell Cycle ProteinsCyclin-Dependent Kinase 2Cyclin-Dependent Kinases

Identifiers

PMID37813838
PMCPMC10562473
OpenAlexW4387448749

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.