Evidence map›Paper›PMID 37823896›Full record

ArticleRheumatology international2024

RNAseq-based transcriptomics of treatment-naïve multi-inflammatory syndrome in children (MIS-C) demonstrates predominant activation of matrisome, innate and humoral immune pathways.

Sibabratta Patnaik, Prakashini Mruthyunjaya, Krushna Chandra Murmu, Soumendu Mahapatra, A Raj Kumar Patro, Ramnath Misra, Sanghamitra Pati, Punit Prasad, Sakir Ahmed

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Article in Rheumatology international, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sibabratta PatnaikDepartment of Paediatrics, Kalinga Institute of Medical Sciences, KIIT University, Bhubaneswar, India.ORCID 0000-0002-3020-4229
Prakashini MruthyunjayaDepartment of Clinical Immunology and Rheumatology, Kalinga Institute of Medical Sciences, KIIT University, Bhubaneswar, 751024, India.ORCID 0000-0002-1278-6042
Krushna Chandra MurmuChromatin and Epigenetics Unit, Institute of Life Sciences, Bhubaneswar, India.ORCID 0000-0002-5568-680X
Soumendu MahapatraChromatin and Epigenetics Unit, Institute of Life Sciences, Bhubaneswar, India.ORCID 0000-0002-9304-6221
A Raj Kumar PatroDepartment of Biochemistry and Molecular Diagnostics, Kalinga Institute of Medical Sciences, KIIT University, Bhubaneswar, India.ORCID 0000-0002-6725-7148
Ramnath MisraDepartment of Clinical Immunology and Rheumatology, Kalinga Institute of Medical Sciences, KIIT University, Bhubaneswar, 751024, India.ORCID 0000-0001-7921-4199
Sanghamitra PatiDirector of Public Health, ICMR-RMRC, Bhubaneswar, India.ORCID 0000-0002-7717-5592
Punit PrasadChromatin and Epigenetics Unit, Institute of Life Sciences, Bhubaneswar, India. punit@ils.res.in.ORCID 0000-0002-9132-6078
Sakir AhmedDepartment of Clinical Immunology and Rheumatology, Kalinga Institute of Medical Sciences, KIIT University, Bhubaneswar, 751024, India. sakir005@gmail.com.ORCID 0000-0003-4631-311X
Institute of Medical Sciences · INInstitute of Life Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MIS-C is a rare, highly inflammatory state resembling incomplete Kawasaki disease, temporarily associated with COVID-19. The pathogenesis is not completely known. RNAseq was carried out on whole blood of six treatment-naïve MIS-C patients. This was compared against RNAseq transcriptomics data of five healthy controls (HC), four Kawasaki Disease (KD) and seven systemic Juvenile Idiopathic Arthritis (sJIA). Using PCA, MIS-C clustered separately from HC, KD and sJIA. Amongst the top 50 significant genes in the three comparisons with HC, KD, and sJIA, common genes were: TMCC2, ITGA2B, DMTN, GFI1B, PF4, QSER1, GRAP2, TUBB1. DSEA revealed that maximum number of hits for overexpressed pathways was for NABA matrisome activation when MIS-C was compared against HC. Cytokine stimulated cellular activation pathways, specifically IL-10 were downregulated. MIS-C had more activated pathways of neutrophil degranulation and acquired immune activation but less of coagulation system or heat-shock system involvement as compared to KD. As compared to sJIA, humoral immune response and complements were activated. Matrisome activation was higher, with increased cell-cell interaction and ECM signalling. This analysis revealed novel insights into the pathogenesis of MIS-C, including the potential role of matrisomes, humoral immune system and down-regulated interleukin-10 pathways.

Indexed as

COVID-19Immunity, HumoralImmunity, InnateTranscriptomeArthritis, JuvenileCase-Control StudiesChildChild, PreschoolFemaleGene Expression ProfilingHumansInfantMaleMucocutaneous Lymph Node SyndromeRNA-SeqSARS-CoV-2COVID-19MatrisomeMIS-CNext-generation sequencingTranscriptomics

Identifiers

PMID37823896
OpenAlexW4387564198

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.