Evidence map›Paper›PMID 37824616›Full record

ArticleScience advances2023

A single-cell multi-omic atlas spanning the adult rhesus macaque brain.

Kenneth L Chiou, Xingfan Huang, Martin O Bohlen, Sébastien Tremblay, Alex R DeCasien, Diana R O'Day, Cailyn H Spurrell, Aishwarya A Gogate, Trisha M Zintel, Cayo Biobank Research Unit and 7 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 2 countries.

Kenneth L ChiouCenter for Evolution and Medicine, Arizona State University, Tempe, AZ, USA.ORCID 0000-0001-7247-4107
Xingfan HuangDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0001-6280-9743
Martin O BohlenDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.ORCID 0000-0001-6522-146X
Sébastien TremblayDepartment of Neuroscience, University of Pennsylvania, Philadelphia, PA, USA.
Alex R DeCasienSection on Developmental Neurogenomics, National Institute of Mental Health, Bethesda, MD, USA.
Diana R O'DayBrotman Baty Institute for Precision Medicine, Seattle, WA, USA.ORCID 0000-0002-8398-8389
Cailyn H SpurrellBrotman Baty Institute for Precision Medicine, Seattle, WA, USA.ORCID 0000-0003-0681-3697
Aishwarya A GogateBrotman Baty Institute for Precision Medicine, Seattle, WA, USA.ORCID 0000-0002-4587-5295
Trisha M ZintelCenter for Evolution and Medicine, Arizona State University, Tempe, AZ, USA.
Cayo Biobank Research Unit
Madeline G AndrewsSchool of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ, USA.ORCID 0000-0002-5154-5081
Melween I MartínezCaribbean Primate Research Center, University of Puerto Rico, San Juan, PR, USA.ORCID 0000-0003-1030-9506
Lea M StaritaDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0003-2870-5099
Michael J MontagueDepartment of Neuroscience, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0003-0253-4404
Michael L PlattDepartment of Neuroscience, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0003-3912-8821
Jay ShendureDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.ORCID 0000-0002-1516-1865
Noah Snyder-MacklerCenter for Evolution and Medicine, Arizona State University, Tempe, AZ, USA.ORCID 0000-0003-3026-6160
Arizona State University · USBrotman Baty Institute · USUniversity of Pennsylvania · USUniversity of Washington · USDuke University · USHoward Hughes Medical Institute · USNational Institute of Mental Health · USUniversity of Puerto Rico System · PR

Funding

Translational Science InitiativeP40OD012217 · OD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI CARLOS A SARIOL · 2012 to 2026
$40.4M
GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
Mechanisms Regulating Complex Social BehaviorR01MH108627 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI HUETTEL, SCOTT ALLEN, PLATT, MICHAEL L · 2016 to 2025
$7.1M
Neural Circuit Mechanisms Mediating TMS and Oxytocin Effects on Social CognitionR37MH109728 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI PLATT, MICHAEL L · 2016 to 2025
$6.7M
Versatile, exponentially scalable methods for single cell molecular profilingR01HG010632 · NHGRI · UNIVERSITY OF WASHINGTON · PI Jay Ashok Shendure, Bruce Colston Trapnell · 2019 to 2026
$5.9M
Single cell transcriptional and epigenomic atlas of the macaque brain across the lifespanU01MH121260 · NIMH · UNIVERSITY OF WASHINGTON · PI PLATT, MICHAEL L, SHENDURE, JAY ASHOK · 2019 to 2021
$4.8M
Social modifiers of the pace of aging across multiple domains and tissuesR01AG060931 · NIA · UNIVERSITY OF WASHINGTON · PI BRENT, LAUREN JOHANNA NICOLE, HIGHAM, JAMES P · 2019 to 2023
$3.6M
Animal Model of Genetics and Social Behavior in Autism Spectrum DisordersR01MH096875 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI PLATT, MICHAEL L · 2012 to 2016
$3.6M
Impacts of hurricanes and social buffering on biological aging in a free-ranging animal modelR01AG084706 · NIA · NEW YORK UNIVERSITY · PI Lauren Johanna Nicole Brent, James P Higham · 2023 to 2026
$2.5M
Neurogenomics of Vulnerability and Resilience to Mental Health Syndromes in Response to Extreme Life EventsR01MH118203 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI PLATT, MICHAEL L · 2019 to 2023
$1.9M
Neurogenetic Model of Social Behavior Heterogeneity in Autism Spectrum DisordersR01MH089484 · NIMH · DUKE UNIVERSITY · PI PLATT, MICHAEL L · 2009 to 2010
$1.6M
Effects of a major natural disaster on the pace of aging in a nonhuman primate modelR56AG071023 · NIA · NEW YORK UNIVERSITY · PI BRENT, LAUREN JOHANNA NICOLE, HIGHAM, JAMES P · 2021 to 2021
$839k
NHGRI NIH HHS R01 HG010632NIA NIH HHS K99 AG075241NIA NIH HHS R00 AG051764NIA NIH HHS R00 AG075241NIA NIH HHS R01 AG060931NIA NIH HHS R01 AG084706NIA NIH HHS R21 AG073958NIA NIH HHS R56 AG071023NIA NIH HHS T32 AG000057NIH HHS P40 OD012217NIMH NIH HHS R01 MH089484NIMH NIH HHS R01 MH096875NIMH NIH HHS R01 MH108627NIMH NIH HHS R01 MH118203NIMH NIH HHS R37 MH109728NIMH NIH HHS R56 MH122819NIMH NIH HHS U01 MH121260
6 · The paper itself

Abstract

Cataloging the diverse cellular architecture of the primate brain is crucial for understanding cognition, behavior, and disease in humans. Here, we generated a brain-wide single-cell multimodal molecular atlas of the rhesus macaque brain. Together, we profiled 2.58 M transcriptomes and 1.59 M epigenomes from single nuclei sampled from 30 regions across the adult brain. Cell composition differed extensively across the brain, revealing cellular signatures of region-specific functions. We also identified 1.19 M candidate regulatory elements, many previously unidentified, allowing us to explore the landscape of cis-regulatory grammar and neurological disease risk in a cell type-specific manner. Altogether, this multi-omic atlas provides an open resource for investigating the evolution of the human brain and identifying novel targets for disease interventions.

Indexed as

BrainMultiomicsAnimalsMacaca mulattaTranscriptome

Identifiers

PMID37824616
PMCPMC10569716
OpenAlexW4387568508

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.