Evidence map›Paper›PMID 37827329›Full record

ArticleJournal of molecular biology2024

Single Amino Acid Mutation Decouples Photochemistry of the BLUF Domain from the Enzymatic Function of OaPAC and Drives the Enzyme to a Switched-on State.

Jinnette Tolentino Collado, Emoke Bodis, Jonatan Pasitka, Mihaly Szucs, Zsuzsanna Fekete, Nikolett Kis-Bicskei, Elek Telek, Kinga Pozsonyi, Sofia M Kapetanaki, Greg Greetham and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Jinnette Tolentino ColladoDepartment of Chemistry, Stony Brook University, New York 11794, United States.
Emoke BodisDepartment of Biophysics, Medical School, University of Pecs, Szigeti str. 12, 7624 Pecs, Hungary.
Jonatan PasitkaDepartment of Biophysics, Medical School, University of Pecs, Szigeti str. 12, 7624 Pecs, Hungary.
Mihaly SzucsDepartment of Biophysics, Medical School, University of Pecs, Szigeti str. 12, 7624 Pecs, Hungary.
Zsuzsanna FeketeDepartment of Biophysics, Medical School, University of Pecs, Szigeti str. 12, 7624 Pecs, Hungary.
Nikolett Kis-BicskeiDepartment of Biophysics, Medical School, University of Pecs, Szigeti str. 12, 7624 Pecs, Hungary.
Elek TelekDepartment of Biophysics, Medical School, University of Pecs, Szigeti str. 12, 7624 Pecs, Hungary.
Kinga PozsonyiDepartment of Biophysics, Medical School, University of Pecs, Szigeti str. 12, 7624 Pecs, Hungary.
Sofia M KapetanakiDepartment of Biophysics, Medical School, University of Pecs, Szigeti str. 12, 7624 Pecs, Hungary.
Greg GreethamCentral Laser Facility, Research Complex at Harwell, Rutherford Appleton Laboratory, Didcot OX11 0QX, UK.
Peter J TongeDepartment of Chemistry, Stony Brook University, New York 11794, United States. Electronic address: peter.tonge@stonybrook.edu.
Stephen R MeechSchool of Chemistry, University of East Anglia, Norwich, NR4 7TJ, UK. Electronic address: s.meech@uea.ac.uk.
Andras LukacsDepartment of Biophysics, Medical School, University of Pecs, Szigeti str. 12, 7624 Pecs, Hungary. Electronic address: andras.lukacs@aok.pte.hu.
University of Pecs · HUStony Brook University · USRutherford Appleton Laboratory · GBUniversity of East Anglia · GB

Funding

IRACDA - The New York Consortium for the Advancement of Postdoctoral Scholars (NY CAPS)Phase IIK12GM102778 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI Carol A. Carter, Karian Janice Wright · 2012 to 2026
$13.1M
IMSD at Stony Brook University: Maximizing Excellence in Research for Graduate Education -- Fostering Inclusive Research Scientist Training (FIRST)T32GM135746 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GERGEN, JOHN PETER · 2021 to 2025
$2.3M
NIGMS NIH HHS K12 GM102778NIGMS NIH HHS T32 GM135746
6 · The paper itself

Abstract

Photoactivated adenylate cyclases (PACs) are light-activated enzymes that combine a BLUF (blue-light using flavin) domain and an adenylate cyclase domain that are able to increase the levels of the important second messenger cAMP (cyclic adenosine monophosphate) upon blue-light excitation. The light-induced changes in the BLUF domain are transduced to the adenylate cyclase domain via a mechanism that has not yet been established. One critical residue in the photoactivation mechanism of BLUF domains, present in the vicinity of the flavin is the glutamine amino acid close to the N5 of the flavin. The role of this residue has been investigated extensively both experimentally and theoretically. However, its role in the activity of the photoactivated adenylate cyclase, OaPAC has never been addressed. In this work, we applied ultrafast transient visible and infrared spectroscopies to study the photochemistry of the Q48E OaPAC mutant. This mutation altered the primary electron transfer process and switched the enzyme into a permanent 'on' state, able to increase the cAMP levels under dark conditions compared to the cAMP levels of the dark-adapted state of the wild-type OaPAC. Differential scanning calorimetry measurements point to a less compact structure for the Q48E OaPAC mutant. The ensemble of these findings provide insight into the important elements in PACs and how their fine tuning may help in the design of optogenetic devices.

Indexed as

Adenylyl CyclasesBacterial ProteinsGlutamineOscillatoriaElectron TransportEnzyme ActivationFlavinsLightMutationProtein DomainsAdenylyl CyclasesBacterial ProteinsFlavinsGlutaminechemistryprocessing and function of biologically important macromolecules and complexesstructure

Identifiers

PMID37827329
PMCPMC11256462
OpenAlexW4387478093

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.