Evidence map›Paper›PMID 37828896›Full record

ArticleDisease models & mechanisms2023

A method for TAT-Cre recombinase-mediated floxed allele modification in ex vivo tissue slices.

Sek-Shir Cheong, Tiago C Luis, Michelle Stewart, Rosie Hillier, Matthew Hind, Charlotte H Dean

Open access · goldAbstract read
In one paragraph

Article in Disease models & mechanisms, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Sek-Shir CheongNational Heart and Lung Institute (NHLI), Imperial College London, London SW7 2AZ, UK.
Tiago C LuisCentre for Inflammatory Diseases, Department of Immunology and Inflammation, Imperial College London, London W12 0NN, UK.
Michelle StewartThe Mary Lyon Centre at MRC Harwell, Harwell Campus, Oxfordshire OX11 0RD, UK.
Rosie HillierThe Mary Lyon Centre at MRC Harwell, Harwell Campus, Oxfordshire OX11 0RD, UK.
Matthew HindNational Heart and Lung Institute (NHLI), Imperial College London, London SW7 2AZ, UK.ORCID 0000-0002-9966-9446
Charlotte H DeanNational Heart and Lung Institute (NHLI), Imperial College London, London SW7 2AZ, UK.ORCID 0000-0002-8846-5472
Imperial College London · GBMary Lyon Centre at MRC Harwell · GBCentre for Inflammation Research · GBRoyal Brompton & Harefield NHS Foundation Trust · GB

Funding

Wellcome TrustWellcome Trust 210424/Z/18/Z
6 · The paper itself

Abstract

Precision-cut lung slices (PCLS) are used for a variety of applications. However, methods to manipulate genes in PCLS are currently limited. We developed a new method, TAT-Cre recombinase-mediated floxed allele modification in tissue slices (TReATS), to induce highly effective and temporally controlled gene deletion or activation in ex vivo PCLS. Treatment of PCLS from Rosa26-flox-stop-flox-EYFP mice with cell-permeant TAT-Cre recombinase induced ubiquitous EYFP protein expression, indicating successful Cre-mediated excision of the upstream loxP-flanked stop sequence. Quantitative real-time PCR confirmed induction of EYFP. We successfully replicated the TReATS method in PCLS from Vangl2flox/flox mice, leading to the deletion of loxP-flanked exon 4 of the Vangl2 gene. Cre-treated Vangl2flox/flox PCLS exhibited cytoskeletal abnormalities, a known phenotype caused by VANGL2 dysfunction. We report a new method that bypasses conventional Cre-Lox breeding, allowing rapid and highly effective gene manipulation in ex vivo tissue models.

Indexed as

IntegrasesAllelesAnimalsMiceMice, TransgenicPhenotypeCre recombinaseIntegrasesAllele modificationCell-permeant Cre recombinaseGene manipulationPrecision-cut lung slicesPrecision-cut tissue slicesTAT-Cre

Identifiers

PMID37828896
PMCPMC10629676
OpenAlexW4387599278

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.