Evidence map›Paper›PMID 37834458›Full record

ArticleInternational journal of molecular sciences2023

Blood-Based Transcriptomic Biomarkers Are Predictive of Neurodegeneration Rather Than Alzheimer's Disease.

Artur Shvetcov, Shannon Thomson, Jessica Spathos, Ann-Na Cho, Heather M Wilkins, Shea J Andrews, Fabien Delerue, Timothy A Couttas, Jasmeen Kaur Issar, Finula Isik and 10 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 2 countries.

Artur ShvetcovDepartment of Psychological Medicine, Sydney Children's Hospitals Network, Sydney, NSW 2031, Australia.
Shannon ThomsonNeuroinflammation Research Group, Centre for Immunology and Allergy Research, Westmead Institute for Medical Research, Sydney, NSW 2145, Australia.
Jessica SpathosNeuroinflammation Research Group, Centre for Immunology and Allergy Research, Westmead Institute for Medical Research, Sydney, NSW 2145, Australia.
Ann-Na ChoDementia Research Centre, Macquarie Medical School, Faculty of Medicine, Health and Human Sciences, Macquarie University, Sydney, NSW 2109, Australia.ORCID 0000-0003-0047-8867
Heather M WilkinsUniversity of Kansas Alzheimer's Disease Research Centre, Kansas City, KS 66160, USA.ORCID 0000-0003-4563-4544
Shea J AndrewsDepartment of Psychiatry & Behavioral Sciences, University of California San Francisco, San Francisco, CA 94143, USA.
Fabien DelerueDepartment of Genetics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.ORCID 0000-0001-7944-2108
Timothy A CouttasBrain and Mind Centre, Translational Research Collective, Faculty of Medicine and Health, The University of Sydney, Sydney, NSW 2050, Australia.ORCID 0000-0002-5896-2638
Jasmeen Kaur IssarMolecular Neurobiology Research Laboratory, Kids Research, Children's Medical Research Institute, Children's Hospital at Westmead, Westmead, NSW 2145, Australia.
Finula IsikNeuroinflammation Research Group, Centre for Immunology and Allergy Research, Westmead Institute for Medical Research, Sydney, NSW 2145, Australia.
Simranpreet KaurMurdoch Children's Research Institute, Royal Children's Hospital, Parkville, VIC 3052, Australia.
Eleanor DrummondSchool of Medical Sciences, Faculty of Medicine Health, The University of Sydney, Sydney, NSW 2050, Australia.
Carol Dobson-StoneSchool of Medical Sciences, Faculty of Medicine Health, The University of Sydney, Sydney, NSW 2050, Australia.ORCID 0000-0002-2211-0257
Shantel L DuffyAllied Health, Research and Strategic Partnerships, Nepean Blue Mountains Local Health District, Penrith, NSW 2750, Australia.ORCID 0000-0001-9586-4730
Natasha M RogersCentre for Transplant and Renal Research, Westmead Institute for Medical Research, Sydney, NSW 2145, Australia.
Daniel CatchpooleThe Tumor Bank, Kids Research, Children's Hospital at Westmead, Westmead, NSW 2145, Australia.ORCID 0000-0001-5836-1413
Wendy A GoldSchool of Medical Sciences, Faculty of Medicine Health, The University of Sydney, Sydney, NSW 2050, Australia.ORCID 0000-0003-1808-0646
Russell H SwerdlowUniversity of Kansas Alzheimer's Disease Research Centre, Kansas City, KS 66160, USA.
David A BrownNeuroinflammation Research Group, Centre for Immunology and Allergy Research, Westmead Institute for Medical Research, Sydney, NSW 2145, Australia.
Caitlin A FinneyNeuroinflammation Research Group, Centre for Immunology and Allergy Research, Westmead Institute for Medical Research, Sydney, NSW 2145, Australia.
The University of Sydney · AUUniversity of Kansas · USChildren's Hospital at Westmead · AUMacquarie University · AURoyal Children's Hospital · AUThe University of Texas MD Anderson Cancer Center · USUniversity of California, San Francisco · USUNSW Sydney · AUWestmead Institute for Medical Research · AU

Funding

Transgenic/Behavior CoreP01AG060882 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SHAO, YONGZHAO · 2020 to 2024
$12.0M
NIA NIH HHS P01 AG060882
6 · The paper itself

Abstract

Alzheimer's disease (AD) is a growing global health crisis affecting millions and incurring substantial economic costs. However, clinical diagnosis remains challenging, with misdiagnoses and underdiagnoses being prevalent. There is an increased focus on putative, blood-based biomarkers that may be useful for the diagnosis as well as early detection of AD. In the present study, we used an unbiased combination of machine learning and functional network analyses to identify blood gene biomarker candidates in AD. Using supervised machine learning, we also determined whether these candidates were indeed unique to AD or whether they were indicative of other neurodegenerative diseases, such as Parkinson's disease (PD) and amyotrophic lateral sclerosis (ALS). Our analyses showed that genes involved in spliceosome assembly, RNA binding, transcription, protein synthesis, mitoribosomes, and NADH dehydrogenase were the best-performing genes for identifying AD patients relative to cognitively healthy controls. This transcriptomic signature, however, was not unique to AD, and subsequent machine learning showed that this signature could also predict PD and ALS relative to controls without neurodegenerative disease. Combined, our results suggest that mRNA from whole blood can indeed be used to screen for patients with neurodegeneration but may be less effective in diagnosing the specific neurodegenerative disease.

Indexed as

Alzheimer DiseaseAmyotrophic Lateral SclerosisNeurodegenerative DiseasesParkinson DiseaseBiomarkersHumansTranscriptomeBiomarkersAlzheimer’s diseasebiomarkersbloodmachine learningneurodegenerative diseasestranscriptomics

Identifiers

PMID37834458
PMCPMC10573468
OpenAlexW4387460002

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.