Evidence map›Paper›PMID 37835407›Full record

ArticleCancers2023

Genome-Wide Characterization of TAZ Binding Sites in Mammary Epithelial Cells.

Tao Liu, Jiaojiao Zhou, Yanmin Chen, Jia Fang, Song Liu, Costa Frangou, Hai Wang, Jianmin Zhang

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Tao LiuDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Elm Street, Buffalo, NY 14203, USA.ORCID 0000-0002-8818-8313
Jiaojiao ZhouDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Elm Street, Buffalo, NY 14203, USA.
Yanmin ChenDepartment of Cancer Genetics & Genomics, Roswell Park Comprehensive Cancer Center, Elm Street, Buffalo, NY 14203, USA.
Jia FangDepartment of Pharmacology and Therapeutics, Roswell Park Comprehensive Cancer Center, Elm Street, Buffalo, NY 14203, USA.
Song LiuDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Elm Street, Buffalo, NY 14203, USA.
Costa FrangouDepartment of Molecular and Cellular Biology, Roswell Park Comprehensive Cancer Center, Elm Street, Buffalo, NY 14203, USA.
Hai WangDepartment of Molecular and Cellular Biology, Roswell Park Comprehensive Cancer Center, Elm Street, Buffalo, NY 14203, USA.
Jianmin ZhangDepartment of Cancer Genetics & Genomics, Roswell Park Comprehensive Cancer Center, Elm Street, Buffalo, NY 14203, USA.ORCID 0000-0001-7844-6254
Roswell Park Comprehensive Cancer Center · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI CANDACE S JOHNSON · 1985 to 2026
$116.6M
Immuno-Oncology Translation Network: Data Management and Resource-Sharing Center at RPCIU24CA232979 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI HUTSON, ALAN DAVID, LIU, SONG · 2018 to 2024
$8.9M
YAP1 and RB1 cooperate to regulate lung cancer lineage plasticity and therapeutic resistanceU24CA274159 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI DAVID W. GOODRICH, Alan David Hutson · 2022 to 2026
$8.5M
The role of TAZ in breast cancer initiation and progressionR01CA207504 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI ZHANG, JIANMIN · 2017 to 2021
$2.0M
Dissecting the Mechanism of SETDB1 and its K867 Monoubiquitination in Lung Cancer ProgressionR01CA273231 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI Jia Fang · 2022 to 2026
$2.0M
NCI NIH HHS CA207504; CA273231; CA232979; CA274159; CA016056NCI NIH HHS P30 CA016056NCI NIH HHS R01 CA207504NCI NIH HHS R01 CA273231NCI NIH HHS U24 CA232979NCI NIH HHS U24 CA274159
6 · The paper itself

Abstract

The transcriptional co-activator with PDZ binding motif (TAZ) is a key effector of the Hippo signaling pathway. We and others previously reported that high expression levels of TAZ are positively associated with decreased survival rates and shorter times to relapse in basal-like breast cancer (BLBC) patients. The oncogenic activity of TAZ involves the regulation of diverse signal transduction pathways that direct processes such as cell proliferation, migration, and resistance to apoptosis, albeit through poorly characterized gene expression programs. Here, using a tet-inducible system in mammary epithelial MCF10A cells, we have characterized the TAZ-regulated transcription program using RNA sequencing in a temporal and spatial manner. We further identified global TAZ binding sites at different TAZ activation time points by chromatin immunoprecipitation (ChIP) sequencing analysis. We found that the vast majority of TAZ was rapidly localized in enhancer regions at the early TAZ activation time point and then gradually spread to promoter regions. TAZ bound to enhancer regions following a switch in potential TEAD and FOSL2 transcription factor motifs. Furthermore, the ATAC sequencing analysis indicated that TAZ activation led to chromatin structural alterations. Together, our results have revealed the landscape of genome-wide TAZ binding sites and may lead to improvements in the current understanding of how TAZ regulates the gene expression program that contributes to the development of breast cancer.

Indexed as

ATAC-seqbreast cancerChIP-seqenhancerFOSL2TAZTEAD

Identifiers

PMID37835407
PMCPMC10571831
OpenAlexW4387056518

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.