Evidence map›Paper›PMID 37843099›Full record

ArticleNucleic acids research2023

Hypoxia-induced transcriptional stress is mediated by ROS-induced R-loops.

Tiffany S Ma, Katja R Worth, Conor Maher, Natalie Ng, Chiara Beghè, Natalia Gromak, Anna M Rose, Ester M Hammond

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Tiffany S MaDepartment of Oncology, University of Oxford, Oxford OX3 7DQ, UK.ORCID 0000-0001-7586-0716
Katja R WorthDepartment of Oncology, University of Oxford, Oxford OX3 7DQ, UK.ORCID 0000-0002-4278-8890
Conor MaherDepartment of Oncology, University of Oxford, Oxford OX3 7DQ, UK.
Natalie NgDepartment of Oncology, University of Oxford, Oxford OX3 7DQ, UK.
Chiara BeghèSir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, UK.
Natalia GromakSir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, UK.
Anna M RoseDepartment of Pediatrics, University of Oxford, Oxford OX3 9DU, UK.ORCID 0000-0001-9737-6925
Ester M HammondDepartment of Oncology, University of Oxford, Oxford OX3 7DQ, UK.ORCID 0000-0002-2335-3146
University of Oxford · GB

Funding

Academy of Medical Sciences SGL023\1055Cancer Research UK 28736Motor Neurone Disease Association GROMAK/JUN11/6278
6 · The paper itself

Abstract

Hypoxia is a common feature of solid tumors and is associated with poor patient prognosis, therapy resistance and metastasis. Radiobiological hypoxia (<0.1% O2) is one of the few physiologically relevant stresses that activates both the replication stress/DNA damage response and the unfolded protein response. Recently, we found that hypoxia also leads to the robust accumulation of R-loops, which led us to question here both the mechanism and consequence of hypoxia-induced R-loops. Interestingly, we found that the mechanism of R-loop accumulation in hypoxia is dependent on non-DNA damaging levels of reactive oxygen species. We show that hypoxia-induced R-loops play a critical role in the transcriptional stress response, evidenced by the repression of ribosomal RNA synthesis and the translocation of nucleolin from the nucleolus into the nucleoplasm. Upon depletion of R-loops, we observed a rescue of both rRNA transcription and nucleolin translocation in hypoxia. Mechanistically, R-loops accumulate on the rDNA in hypoxia and promote the deposition of heterochromatic H3K9me2 which leads to the inhibition of Pol I-mediated transcription of rRNA. These data highlight a novel mechanistic insight into the hypoxia-induced transcriptional stress response through the ROS-R-loop-H3K9me2 axis. Overall, this study highlights the contribution of transcriptional stress to hypoxia-mediated tumorigenesis.

Indexed as

Reactive Oxygen SpeciesR-Loop StructuresTranscription, GeneticTumor HypoxiaDNA, RibosomalHumansRNA Polymerase IDNA, RibosomalReactive Oxygen SpeciesRNA Polymerase I

Identifiers

PMID37843099
PMCPMC10681727
OpenAlexW4387661475

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.