Evidence map›Paper›PMID 37856019›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Immunolabel-First-Expand-Later Expansion Microscopy Approach Using Stable STED Dyes.

Dong Kong, Delgermaa Luvsanjav, Jadranka Loncarek

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Dong KongCancer Innovation Laboratory, NIH/NCI/CCR, Frederick, MD, USA.
Delgermaa LuvsanjavCancer Innovation Laboratory, NIH/NCI/CCR, Frederick, MD, USA.
Jadranka LoncarekCancer Innovation Laboratory, NIH/NCI/CCR, Frederick, MD, USA. jadranka.loncarek@nih.gov.

Funding

Control of centrosome biogenesisZIABC011459 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LONCAREK, JADRANKA · 2012 to 2025
$16.1M
6 · The paper itself

Abstract

Multiple expansion microscopy approaches have been successfully used in the analysis of centrioles, centrosomes, and cilia, helping to reveal the localization of numerous centrosomal and ciliary proteins at nanoscale resolution. In this chapter, we describe the use of two stable STED dyes in combination with expansion microscopy, which allows the robust detection by conventional and STED microscopy of proteins immunolabeled prior to sample expansion. We demonstrate the stability of these dyes during the crosslinking, polymerization, and denaturation steps of an expansion protocol thereby allowing their use in an immunolabel-first-expand-later approach. Our protocol overcomes the frequent technical limitation of poor, unreproducible binding of primary antibodies to proteins after denaturation. We demonstrate the applicability of this approach by analyzing both a centriole appendage protein Cep164 and a ciliary protein ARL13B.

Indexed as

Coloring AgentsMicroscopyAntibodiesCentriolesCentrosomeCiliaAntibodiesColoring AgentsAbberior STAR ORANGEAbberior STAR REDCentrioleCentrosomeCep164CiliaExpansionSTED

Identifiers

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.